HsaINT0107490 @ hg19
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8380194-8381764:-
Coord C1 exon
chr17:8381656-8381764
Coord A exon
chr17:8380367-8381655
Coord C2 exon
chr17:8380194-8380366
Length
1289 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GTTCATGTACCCTCCCCAAGATG
3' ss Score
3.73
Exon sequences
Seq C1 exon
GGAACGAGCAGCCGCCAACAAATTAGTCCGTCGCACTGAGAAGAAGCTGAAAGAAATCTTCATGCAGGTTGAGGATGAGCGTCGACACGCGGACCAGTATAAAGAGCAG
Seq A exon
GTACGCGAGGAAGTGCCTCCCTGGGAAGCGCGTGAGCAAAGGAACTGGTGGAGAATGAGCTGGTGGCACAACTGACCAGTGGAATTCAGGGCCCTCCCGATTCTGATGTTTCAGCTAACGTGGGCTGTTCCATGTTCCTGGTGGGCACTCCCAGTACCCGAGACACAGGAGGGCGGGGAGAGCAGGTCAGGAAGCAAGTTCAGTGAGGCCTGGACTGAACTGTAAAGCTCCTGCTTCCTCCACTAGAATGTGTGCTTCGTGAGTACAGGGATTTCTGCCTGTTTTGCTCCCTGTTATCTCCCTAATGCCTAGTATAGTTTCTGGATATTGCTGGCAGTCATGAGATACTGGCTGGGTGTAGGGTGGGCACAGGAGATACTGAATAGAAAGTGAAGGGAAGACAAAGGTACTGCACGCTGCACCCGAGTGAGCTTCAGCGTCTGCATCCAGGCCCCCTTTTCTAAGTACACAGGGAATGTTCCGCAGGACTTTGAACTGTGGGTCAGGCCTGCCCTGATTGCAGCGTGGGCAGCTATACCCTCCCTCCCGCTCCCTGCCCTCTGCCTGGTGAGACTTCACACTGCAGACACTGGCCAGAAAGGTGGATGGATCTGAGGATTTCACTGCCTTTGGCCCGAACCCTCCCCAACTTCATTCATTCAGTCAGGCAACCTGGCCTTCCCTTCCCACCCCCACCCTTGGGGCCTAGCAACACGGAGCACAGTTGAGGGTGGTGTGCGCTGGACCCACGAAGCACTGACCAGTGCCTGTGTGGCTCAGGAATGAAGGGTCCAAAAGGGAGGCTCTTAGTTCTGTGGCATGTCATCCCAGGGTGGCTTTCTGCTTGAATCCAAGTCTAGTATCTGAGATGCCCATCCTTGAAAGGAGGTGTAAAGATGCATTGTACCATCTTCTGGGCTGGGGATTGTCCCACATTGCTGGTTCTTCCACGTTTTGCAAGAATAGCAATTCCCTTTCAGTCCCCTAGGTCACGTGTGTGAAGACAGTAAACGCTGTCATTTTTCTGCAGAAAACTCACTGGTAAAAACAGAGTCTTGAGTACTTTTTCATTTCTTTTGGCCTAGTGTGCTTTGTAGATGCTAGCTTTGCTGAGAGCGGCAGGCCGGTTACAGAGCCTCCGACCAGCCCCCAGGCACGCGTGTACATCCGTGTACACGCGTGCTCACAAGGGTAACAGGCAGAGCCCCACACTGCCACGCTCGGGGTACAGAGAGGCCGACACTGGATTCACCAGTTTGGTTTGTTTTGGTTCATGTACCCTCCCCAAG
Seq C2 exon
ATGGAGAAGGCCAACGCTCGGATGAAGCAGCTTAAACGCCAGCTGGAGGAAGCAGAAGAAGAAGCGACGCGTGCCAACGCATCTCGGCGTAAACTCCAGCGGGAACTGGATGATGCCACCGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-MYH10:NM_005964:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGCCGCCAACAAATTA
R:
CTCAGCCGGTTCTTCAGGGT
Band lengths:
278-1567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)