MmuINT0103245 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68626471-68628056:+
Coord C1 exon
chr11:68626471-68626579
Coord A exon
chr11:68626580-68627883
Coord C2 exon
chr11:68627884-68628056
Length
1304 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CATTTGTGTAACGCCCCAAGATG
3' ss Score
2.07
Exon sequences
Seq C1 exon
GGAGCGAGCAGCTGCCAACAAACTAGTCCGTCGAACAGAGAAGAAACTGAAAGAAATCTTCATGCAGGTTGAAGACGAGCGTCGGCATGCGGATCAGTATAAGGAGCAG
Seq A exon
GTAGGAAAAGCCAGGCGGGTGAAGGTCACCACTCCAGGAGTGTTTAAGCAGGCAATCAGAGTTAAGGACACTCTTGGAAACTCTTAATTACGGCATTTCAACCCAGGCAGCAGCCTGTGTTCCCCCAGTTCCAATGGGGAGAGCGAGTCAGTGACACTTTGAGGTGTGAGCCCTGGGCTGAGTTTTAAAGTTACATTCAGCTTCCTCCACTCCACCGTGTCGCAGGCAAAGAGGCTTCTTCCAGTCCCCTCCTGTGCCTGGATTAATAGTTCTTGGGTACGGTGAGCATCGGGGACTGGTCAGAGGGAATTTGGGAAATGGTAAACAGCAGCAGAAAGCAGGGATTGTGAAGGGCGTCTGCCCTCATGCACAAACCCTAATCCCAGAGGCTCGGTATTGAAGGGCTCGCTCCAACACTCCTGGGATCCCAGTAGAGCATCGGGATCAAGACCACCTCAGGGCCTTCGCTTCCCTACTTGCCAGGCAAGTGACAACTGCACCCAATGAGGCAGTAGCCAGTCCCTGCAAGTTTAGGAGCAAAGGAGCCACAGTCAGATTCTGGGTGGTTTGGTTTGGTTTGGGTTTTTTTTTGGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGCAGTTTCTCTGTGCAGTCCTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGGTTAAAGGCGTGCGCCACCGCGCCCGGCTCATAGTCTTTTTTTTTTTTTTTAAGATTTATTTGTTTATTTATTTATTCTATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAGAAGAGCAATTGGGTGCTCTTACCCACTGAGCCATCTCACCAGTCCCTCACAGTCATATTCTTAAGTGGGAGCACACTGCACTCTCCAGAGTGGCTGTGTGGAACAGCCACGCTTCACGGACAGTATCCTGTCCAGACTGCTAGCCTTCTGCACAGCCCCATCAGTCATATGGAGATGGAAAACTAGTTTGGTTTCACAGGAAAGGCAGTTTTGAGTTTCTGATTGTGTGGCTTGCTCTGTAAATACTGGCTTTACTAAGGCAAGGGGAAGCACCTTAGAGCAGCCCTAAAACAAGTGCGCTTGTGTGCACGCAAGATGTCACAGAGCGTGCTGACCCTCCGTCGTCTGACCCTGGGTTCTGTTTGCTTTTCATTTGTGTAACGCCCCAAG
Seq C2 exon
ATGGAGAAGGCTAATGCCAGGATGAAGCAGCTTAAACGACAGTTGGAAGAGGCTGAGGAAGAGGCCACACGTGCCAACGCATCTCGGCGTAAACTCCAAAGGGAGCTGGACGACGCCACTGAGGCCAATGAAGGCCTGAGCCGCGAGGTCAGCACTCTCAAGAACCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGCTGCCAACAAACTA
R:
CTGAGCCGGTTCTTGAGAGTG
Band lengths:
278-1582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: