BtaINT0097110 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28681930-28683567:-
Coord C1 exon
chr19:28683459-28683567
Coord A exon
chr19:28682103-28683458
Coord C2 exon
chr19:28681930-28682102
Length
1356 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTCCTATAACTTCCCCGAGATG
3' ss Score
-1.99
Exon sequences
Seq C1 exon
GGAAAGAGCCGCTGCCAATAAACTAGTCCGTCGTACCGAGAAGAAGCTGAAAGAAATCTTCATGCAGGTTGAAGATGAACGCCGCCATGCTGACCAGTATAAAGAACAG
Seq A exon
GTAAGGAGAGAAGGCACGTAAAGGGAACACGTCTTCCACCCTGAATGCTGTACAGGAACACAGATACAAGACCAGCCATGTTACTATGTGACTCGCTGACTTAGGAAGAGCTGTTTGAAACTCTTACTTCTAGTGTTTCAATACACATGCTGTTTCTTGTTCCTGCTGGTCACTCCTGGGTGCTGGGGATACAGAGGTGATTAGGACGCAGCCCTGCCACACAATACATATTGCGAAGGGGTGGGCAAGAGCCTTGAGAAAGGCTTGAAGTGGGGAGGCCTGAACTGATCTTATTACCATGTTTCCTTCACTAGAGTGGACACTGCATGAGTAGAGATTTCTGCCTGTTTTACCCACTGTCTTCTGAATGCCTAGGAAAGTTGTAGTTGGTAGTCATAAGAGTTGACTCATTGGAAGACTCTGGTGCTGGGAGGGATTAGGGGCAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATAGCATCACCAACTCGATGGACGTGAGTAAACTCCAGGACTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGAGTCGCAAAGTCGGACACGACTGAGTGACTGAACAGAACTGAACATTGGCTGGGTGGAGGGGCAGATGCAAGAGGTAGTGGGAAGGGAAGAAAAAGCGAGTGCACTACACCTGGGACCCAAGTGGTCGTCCTCGTCTGTGTCCAGGTGTCTGTCTCCTAAGTGTCAGGGCGCGTCAGCTCTGTACTGGCTGCAGCCTGGGGGGCTGTGCTCTCGCTCGTCTGGGAGACCTGAGGATCCACTGCCTCTAGCCCAGACCCTTCCCTCTCCATCCCAGGGCCTAGCAACTCCGAGAGCAGTTCTGGGTGGGTGTGAACTGGACCAGCACGGTGTTGGCCAGCTTCTGTGGCTCAGGAGTGGGCGGGCTAGTGGCAGGCCAAGTTCTCACTTGGTTTTCCAGAGCGGCTTGGTACTTAGAATATTGACATGCCCGTGTTGAAAAGAGGTGTAAAATGAACACACCATCTCCTGGGGGTGGAGACTATCTGTGTTGCTGGTAATAGCAGTTTCCTTTCATAATTCCATAGATCACTCATGTGAAGATGTCATTTTTCTGTAGAAAACTCAGGGATGAAAATTGGATTTCAGTTGTTTAAAAGTTTCCTTTAGCCTAATATGCTGTGTAGACACAGTTGTGCAGAGAATGGCAGGCTGTTCAAAAGGCCTCAGGCAGGGCCCTTGTGTGTGCACACACGTGTGGCCAGTGGGGCAGAGGCCTGTGCTGAAACATTGAGGACACAGCAATGTGAATTTGGATTCAGCGGTTTGGTTTGACTCGGTTCCTATAACTTCCCCGAG
Seq C2 exon
ATGGAGAAGGCCAATGCCAGGATGAAGCAGCTCAAGCGGCAGCTGGAGGAAGCAGAGGAAGAAGCTACACGTGCCAACGCATCTCGGCGCAAACTCCAGCGGGAACTGGATGATGCCACTGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAGCCGCTGCCAATAA
R:
CTCAGCCGGTTCTTCAGGGT
Band lengths:
282-1638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development