GgaINT0127270 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1690620-1691248:-
Coord C1 exon
chr18:1691140-1691248
Coord A exon
chr18:1690793-1691139
Coord C2 exon
chr18:1690620-1690792
Length
347 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGACTTTTTTTATTTCAGATG
3' ss Score
10.25
Exon sequences
Seq C1 exon
GGAAAGAGCAGCTGCAAACAAACTGGTGCGGCGCACAGAGAAGAAATTGAAAGAAGTCTTCATGCAGGTGGAGGACGAGCGCCGACACGCAGACCAATACAAGGAGCAG
Seq A exon
GTGGGTGGCTTAGCTTGTGCTTGGGAAAGATGGATAAAACCCTACTGTGAGTAGAAAGGCATTGTTAAGAAGCTTTTTAATGAAGATGGGAGGGAATTCCAGTCTTGATAACTGAACTGGTGGAGCAGTTCCTTGCCTGCTCCCTGTGTTAGCTCTGTTACGATAATGTGTTATTGCACCCCAGTCTCTGAGACCCAGCAGTTGTGGGCTGTTCCCAGAATCCAGATGGGAGTCTGCATTGAGGTTCCATCTCCAGCAGGGGTGGTTGGAGTGCTGGTGAACCTCTCTGCCTTCCCAAGTTGCAGCTGCTGAGTTTGATCCTGACAACCTGACTTTTTTTATTTCAG
Seq C2 exon
ATGGAAAAAGCAAATGCCAGGATGAAGCAGCTGAAGCGCCAGCTGGAGGAGGCTGAGGAGGAAGCCACACGTGCAAATGCTTCCCGACGTAAACTGCAGCGTGAGCTGGATGATGCCACGGAGGCAAATGAGGGCCTGAGCCGGGAGGTCAGCACCCTGAAAAACAGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCTGCAAACAAACTGG
R:
TGTTTTTCAGGGTGCTGACCT
Band lengths:
270-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]