RnoINT0096334 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55402755-55404482:+
Coord C1 exon
chr10:55402755-55402863
Coord A exon
chr10:55402864-55404309
Coord C2 exon
chr10:55404310-55404482
Length
1446 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CATTCATGTAACTCCCCAAGATG
3' ss Score
3.13
Exon sequences
Seq C1 exon
GGAACGCGCAGCTGCCAACAAACTAGTCCGTCGGACAGAGAAGAAACTGAAAGAGATCTTCATGCAGGTCGAAGACGAGCGCCGGCATGCGGATCAGTATAAGGAGCAG
Seq A exon
GTAGGAGACAGCCAGGCGGGGTGAGGGTCGCACCGTGGACATGTTTAAGCAAACAAGTCAGAGTTAAGAATGCTTTGGGAAACTTTCTTCTATAAGTTGTAAAAAAAAAAAAAAAAAAAAGAGTTTATTTGAACTTATGATTACAGAGGTATGAGTCTATAATTGTCTAGTGGAGGCATGGTGGGTGGAACTGGGAGCTAAGAACTCACATCTTGAACCCTAAGGAAGCAACAGAGAGAGAAAATTGGGAATGGCATGAATCTGTAGATTCCCAAACCCACCTATAATGACATTCTTCCTCCAACAAGGCCTTACCTCCTAAGTCCTCCCTACACTACATCACCGGAGGATGAAGTATCCCAACAGCTGAGCTGATAGAGAACATTCTTATCCAAAGACCAGGGTTTCCAGCACCCATTTGTGTTACCCCTAACCTAGCCTTAATCTCCACAAATGTAGAAATTGACTTCAATCTTGATCCTCTGTTTTATTTATGCTCAACATTTAACAAAATGTCTAGCATGGAGTCTATCATTATTTACAAAGCTCATAAACAAATACACAGTGAAAGGAAGCTAAGCGAATGTGGTAGATTGATCAATAGATTAGTAAGATTTTTGATTAGAGTTGGGAAACTCTTAATGATGGCATTTCAACTGACTGCAGCATCAGTGTCCCGTGTGAGCTCTGGGGTGGATTTTAGTTACATGCAGCTTCCTCCACTAAAGCATTCCTGTGCCTGGAATAATAGTTCTTGGGTACAGCAAGCATCGGGAAACTAGATGGAGGAAAAGTGGGAGGTGGCAAACCACAGAAACCAGGGATATGTGAAGGGTGTTTGCCCACATGCACCAAACCCTAATACCAGACGCACGTTACTGGAGGGCTCTCTCCAACAGTAACACACCTGGGGTCCCATAGAGCATCGGGGGATCAGCGCCAGCCTGGCTATAAAAACTGTCTCAAGGCAGTAGATAGGGTGTGCCCGTGGGAACTGAGCACACATCCTGCCTGCAGCCTGTCCACGCCTCCCTCACCACTGAGGGTTCGTTGACTTTGGGCCAGTCCCTGCAAATTTAGGAGCAAAGGATCCAGAGTCAGATTCTTAAGAAGTGGGAATGTATTCTCCCAGAGTGGCTGTGTGAACAGCCAGGCTTCACGGACAGTATCCTGTCCAGACTGCTAGCCTTTTGCATAACCTCATCAGTCACATGTGTGGAGATGGAAAACAAAAACTCATGGGTAAGGCAGTTCTGAGTTTCTGATTATGTAGCTTGCTCTGTAAATACTGGTTCTACTACAGCAAGGGAAGCGCCTTAGAGCAGCCCTGAAACAAACGTGCATGTGTGTGCAGGAGCCCACACAAGATGTCACAGAGCGCGCTGACCCTCCAGGCCATCTGACCCTGGATTCTCTGTTTGCCTTTCATTCATGTAACTCCCCAAG
Seq C2 exon
ATGGAGAAAGCCAATGCCAGGATGAAGCAGCTTAAACGCCAGCTGGAAGAAGCTGAGGAGGAGGCTACACGTGCCAATGCATCTCGGCGTAAACTCCAAAGGGAACTGGATGATGCCACCGAGGCCAATGAGGGCCTGAGCCGTGAGGTCAGCACTCTCAAGAACCGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCAACAAACTAGTCCG
R:
TAAGCCGGTTCTTGAGAGTGC
Band lengths:
272-1718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]