DreINT0099752 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7495478-7495834:+
Coord C1 exon
chr6:7495478-7495586
Coord A exon
chr6:7495587-7495661
Coord C2 exon
chr6:7495662-7495834
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCAGTGTTGTGTATGTTTAGATG
3' ss Score
5.66
Exon sequences
Seq C1 exon
GGAAAGAGCTGCAGCTAATAAGATTGTGCGTCGCACAGAGAAGAAGCTGAAGGAGGTGTTCATGCAGGTGGAGGACGAGCGGCGCCATGCAGACCAGTATAAAGAACAG
Seq A exon
GTGAGATGAAGCTTCTCGCACACTGCCAGTCAAAGCAAACGAAACACCTCTGACACCAGTGTTGTGTATGTTTAG
Seq C2 exon
ATGGAAAAGGCCAACTCGCGCATGAAGCAGCTGAAGAGGCAGCTGGAGGAGGCTGAGGAGGAGGCGACGCGAGCAAACGCCTCCCGCAGGAAACTGCAGAGAGAGCTGGATGACGCCACTGAAGCCAGCGAGGGGCTGAGCCGAGAGGTCAACACACTCAAGAACAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTTCATGCAGGTGGAG
R:
TCATCCAGCTCTCTCTGCAGT
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]