HsaINT0107492 @ hg19
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8377530-8380366:-
Coord C1 exon
chr17:8380194-8380366
Coord A exon
chr17:8379267-8380193
Coord C2 exon
chr17:8377530-8379266
Length
927 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGCTTCCTGTGTTCTCCAGGCG
3' ss Score
10.18
Exon sequences
Seq C1 exon
ATGGAGAAGGCCAACGCTCGGATGAAGCAGCTTAAACGCCAGCTGGAGGAAGCAGAAGAAGAAGCGACGCGTGCCAACGCATCTCGGCGTAAACTCCAGCGGGAACTGGATGATGCCACCGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGGCTGAG
Seq A exon
GTGAGCAGGCATGCGGCCCCGAGCTGACAGGCAGCTGCTTTGTGGGTTAGCTTAGGCTCGGGGTGCAGCTGGTCAGAGGAAGTTTACTTAGATCCATACCCAGTGACCCATTCTTTCTCCCGAACCACTTCATTTAAGATTTCTGACCTTTATAGTCGTCCTTGGGGAGAATAAAAGAGGAGGCGGCCCTATTCATTGCCAGTCACTAGAGGACCACACTAATCCACCACACCAGGCTGGAGCTGGGTCAGGCATCCATCCCTGTCCAGATATCCATTAGTGAAGTGAGCTCCCAGCCTCTCTTAAAAAGCAGGGCAGGAGCTCCTCCTGGGACCTGGTGCCATCAGCCCTCCTCAGCACCGTCCTCCTCACCACAATGGATCTGCTCTGTACCAGTGAGAGGGCAGAGCGTGAGAGAGCTACAGCTGAAGTCTCTGCCCCAGAAGACCAGGTCGGCGGAGGTTTCAGCACATCTGGCCAATGGGCAGATTTGGTGCATACCCTGCTTTTATACAGCCATCAAACTAAGCATGGTTTCTACATTTTTAAATGGTTATAAAAACGCCGAAACAAAGAATATGCAACAGAGTCCCTATGTGGCCCACTTTGCTATCTGGCTGATTCCCTGGTTAGCAGGTAGAGCTTGGCCTTAATCCGTCTTCCTTACCATTTCCATCACACAGTCCTAGGCTGAATCAAGTCCTCCCCAGTTCTCCAAGGACCCTGCTTCGCGTACTCTGCAGGCAGGGTTGTGGGAGAGGCAGAAAAGCACGCAGTCCTTCCCCATCGTACCGCCACCCCCACAAGGTCGTGTGTCCGAGGAGGGGGTGCAAGGGGAAGGTTCCGTGGCATTGAGTGGTTGAACATATTGACAGCCATGTGCTCCTGTCTGTTTACCCACACACATCTGCTTCCTGTGTTCTCCAG
Seq C2 exon
GCGGGGTGGCCCCATCAGCTTCTCTTCCAGCCGATCTGGCCGGCGCCAGCTGCACCTTGAAGGAGCTTCCCTGGAGCTCTCCGACGATGACACAGAAAGTAAGACCAGTGATGTCAACGAGACGCAGCCACCCCAGTCAGAGTAAAGTTGCAGGAAGCCAGAGGAGGCAATACAGTGGGACAGTTAGGAATGCACCCGGGGCCTCCTGCAGATTTCGGAAATTGGCAAGCTACGGGATTCCTTCCTGAAAGATCAACTGTGTCTTAAGGCTCTCCAGCCTATGCATACTGTATCCTGCTTCAGACTTAGGTACAATTGCTCCCCTTTTTATATATAGACACACACAGGACACATATATTAAACAGATTGTTTCATCATTGCATCTATTTTCCATATAGTCATCAAGAGACCATTTTATAAAACATGGTAAGACCCTTTTTAAAACAAACTCCAGGCCCTTGGTTGCGGGTCGCTGGGTTATTGGGGCAGCGCCGTGGTCGTCACTCAGTCGCTCTGCATGCTCTCTGTCATACAGACAGGTAACCTAGTTCTGTGTTCACGTGGCCCCCGACTCCTCAGCCACATCAAGTCTCCTAGACCACTGTGGACTCTAAACTGCACTTGTCTCTCTCATTTCCTTCAAATAATGATCAATGCTATTTCAGTGAGCAAACTGTGAAAGGGGCTTTGGAAAGAGTAGGAGGGGTGGGCTGGATCGGAAGCAACACCCATTTGGGGTTACCATGTCCATCCCCCAAGGGGGGCCCTGCCCCTCGAGTCGATGGTGTCCCGCATCTACTCATGTGAACTGGCCTTGGCGAGGGCTGGTCTGTGCATAGAAGGGATAGTGGCCACACTGCAGCTGAGGCCCCAGGTGGCAGCCATGGATCATGTAGACTTCCAGATGGTCTCCCGAACCGCCTGGCTCTGCCGGCGCCCTCCTCACGTCAGGAGCAAGCAGCCGTGGACCCCTAAGCCGAGCTGGTGGAAGGCCCCTCCCCATCGCCAGCCGGGCCCTCATGCTGACCTTGCAAATTCAGCCGCTGCTTTGAGCCCAAAATGGGAATATTGGTTTTGTGTCCGAGGCTTGTTCCAAGTTTGTCAATGAGGTTTATGGAGCCTCCAGAACAGATGCCATCTTCCTGAATGTTGACATGCCAGTGGGTGTGACTCCTTCATTTTTCCTTCTCCCTTCCCTTTGGACAGTGTTACAGTGAACACTTAGCATCCTGTTTTTGGTTGGTAGTTAAGCAAACTGACATTACGGAAAGTGCCTTAGACACTACAGTACTAAGACAATGTTGAATATATCATTCGCCTCTATAACAATTTAATGTATTCAGTTTTGACTGTGCTTCATATCATGTACCTCTCTAGTCAAAGTGGTATTACAGACATTCAGTGACAATGAATCAGTGTTAATTCTAAATCCTTGATCCTCTGCAATGTGCTTGAAAACACAAACCTTTTGGGTTAAAAGCTTTAACATCTATTAGGAAGAATTTGTCCTGTGGGTTTGGAATCTTGGATTTTCCCCCTTTATGAACTGTACTGGCTGTTGACCACCAGACACCTGACCGCAAATATCTTTTCTTGTATTCCCATATTTCTAGACAATGATTTTTGTAAGACAATAAATTTATTCATTATAGATATTTGCGCCTGCTCTGTTTACTTGAAGAAAAAAGCACCCGTGGAGAATAAAGAGACCTCAATAAACAAGAATAATCATGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-MYH10:NM_005964:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCGGATGAAGCAGCTTAA
R:
CGGGTGCATTCCTAACTGTCC
Band lengths:
357-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)