MmuINT0103247 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68627884-68630126:+
Coord C1 exon
chr11:68627884-68628056
Coord A exon
chr11:68628057-68628428
Coord C2 exon
chr11:68628429-68630126
Length
372 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCTGTGCATTTCTCTCCCAGGCG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATGGAGAAGGCTAATGCCAGGATGAAGCAGCTTAAACGACAGTTGGAAGAGGCTGAGGAAGAGGCCACACGTGCCAACGCATCTCGGCGTAAACTCCAAAGGGAGCTGGACGACGCCACTGAGGCCAATGAAGGCCTGAGCCGCGAGGTCAGCACTCTCAAGAACCGGCTCAG
Seq A exon
GTAAGTGTTCGGTGAGCCATGGAGAGCTGGCAGGCTTCATCTGTGGAAGCTGGATCCAGTCCTCTGGAATCCCCAGGCAAGAGGCAGGACGTTTACAGTAGTGAGCGGGAGAAAGCAGACATTAGAATCCACAGCCTCACTCAAGCAGGGCAGGAAAGGGGAGAGCGGTGTTTAAGAGATAGGGCTTTCCCCATAACCTGTCTTCCTTAACCATGTTGGCCCTGCTCACGTGCAGGGGGGGGGGGGCGGCACAGGATGATGGGGTAGGAAAGCTACCCCCCAAGGCCGTGACGCCCCAGACGGGGTAGAAGGTGGAGAGTGAGCCTTGTTTAGAACCCAGCAGCCTCATGTTCCTGTGCATTTCTCTCCCAG
Seq C2 exon
GCGGGGCGGTCCAATCAGCTTTTCTTCAAGCCGATCTGGCCGGCGCCAGCTGCACATTGAGGGGGCATCGCTAGAGCTGTCAGATGACGACACAGAAAGTAAGACCAGTGATGTCAATGACACACAGCCACCCCAATCAGAATAGGCACAGGAGGTCAGAGGTGATGCTGAGGACAGGCCAGAACTCATCCCAGCACCAGTCTGCTTGAGCCCTGCACTCACTGCTCGGGAATGGCAAGCTCCCAGATTCCTTCCAGGAAAGTCAACTGTGTCTTAAGGCTTTGCGGCCTGCGCAGACTATATCCTGCTTCAGACTAGATACAATTGCCCCTTTTTATATATACACCTCCACAAGACATGCGTATTAAACAGATTGTCTCATCGTTGCATCTATTTTCCATGTATTCATCAAGAGACCATTTTATGACACATTAAGAAGAAAGAACCTTTTTGAAACAAACTCCAGGCCCTTTGTTGCCAGTGGCTGGGCCTAAGGGTTGCCCCGGGACCGTGCTCAGCTGCTCTGCATGCCCTGTCCTACTGACAGGTACCTTAGTTCTGTGTTCATGTGGCCCTGACCCTTCCTTCAACCACACCTGGTCTCTTAGAACATTGTGAACCTAACCTGCACTTGTGTCTCTCATTTCCTGTGAATAGTGATCACTGTCTCAGTGAGCAAACTGGGAGAGGGGCTTTGGCGGCTTAGGGGTGGGTTTGGATTGGGGAAGCAGCATCCATTTGGGGTTCTCCTGCCCATCTCCCAAGGGGTGACCCTGCCCCTCAAATTCATGGTGTCCCCACCGTCTCAATGTGAATAGTCTCAGAGCTCTGTGCACAGAGAGGACAGTGGCCACAACACATAAGGTGCCCCGGGTGGCAGCCATCACAGTAACTTCCAGGTGGTCTCCTGAGTGTCTGGCTTGATAATGCCCTCAATTCAGGAGTGAGCCTCTGTGACCCTTGGGGTGCTCGCAGAAGGCCTCTCCAAGCAGTCAAGCCCTCTTGCAAATTCAGCCACTGCTTTGAGCCCAAAACGGGAATATTAGTTTTATGTCGGAGGTGTGTTCCAAGTTTGTCAATGAGGCTATAGCCTCAAGAAGATGCCATCTGCCTGAATGTTGACATGCCAGCGGGCGTGTGACCCTTCATTTTCCCTTTCCCTTCCTTTGGACAGTGTTACAATGAACACTTAGCATTCTGTTTTTGGTTGATAGTTGAGCAAACTGACATTACAGAAAGTGCCTTAGACACTACAGTACTAAGACAATGTTAAATATATTATTTGCCTCTATAACAACTTAATGTATTAAGTTCTGACTGTGCTTCATATCATGTACCTCTCTAGTGAAGTAGATGCGCAAACATTCAGTGACAGCAAATCAGTGTTAGTGACAAGCCCCGACCGTGGCGATGTGCTGGAAAACACGGACCTTTTGGGTTAAAAGCTTTAACATCTGTGAGGAAGAACTGGTCACATGGGTTTGGAATCTTTGATTTCCCCTGTATGAATTGTACTGGCTGTTGACCACCAGACACCTGACTGCAAATATCTTTTCTTGTATTCCCATATTTCTAGACAATGATTTTTGTAAGACAATAAATTTATTCATTATAGATATTTGCGCCTGCTCTGTTTACTTGGAGGAAAAAGCACCCGTTGAGAACAAACAGACCTCAATAAACAAGAATAATCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCGGCGTAAACTCCAA
R:
GAAGGAATCTGGGAGCTTGCC
Band lengths:
349-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: