BtaINT0097112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28680825-28682102:-
Coord C1 exon
chr19:28681930-28682102
Coord A exon
chr19:28681250-28681929
Coord C2 exon
chr19:28680825-28681249
Length
680 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGTTTTCTGTTCCCTCCAGGCG
3' ss Score
12.05
Exon sequences
Seq C1 exon
ATGGAGAAGGCCAATGCCAGGATGAAGCAGCTCAAGCGGCAGCTGGAGGAAGCAGAGGAAGAAGCTACACGTGCCAACGCATCTCGGCGCAAACTCCAGCGGGAACTGGATGATGCCACTGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGGCTGAG
Seq A exon
GTAAGTGGCTCCAGACACTGTGGTTTTCTTGGCCAAGTGTGCAGATCCTCCTTGGCATGTACCTATTTAGGACTCCTGACCATTGGTGGGCTGGAGAGCAGGGAAGCAACAGGCCACTCACTCACTGGCTCTGTGTTTACTGAGAGGCTGTGCGAATGCACGGCTTGAGGCTTGCGTGCCAGCCCAGGAGTCTGTCCATGTCCCTCGTGGGCAGGGGCAGCCTCTCTACGGCAGACTTGATGCACCCCAGGACACAGGGAGCCAAGGCTTCTCCCCATAAGGACAGCTTAGCACAGGTGTGGCCTGTGGGCTGGAGCCTGTCTGCCCTGCTCTCATACGCTAAGAGTGGTGCTGACAGTGATAAAGGTTGTAAAAAGACCAGCAGAGACCTTAGGAGGCCCACAAAGCCTGCACACAACATTTCCTCTCCATCTGCCCTTTGGGGAGCGGCTGGCCAGGGATGAGCCAGTGGTGCTGTCCTCACTGTGTCTTGGAGGGACAGCAGGGGCCAGCCACCACGGCCCCCAGGACGATGCTCAGTGGGTGGCAGCGGTGGCTAAGCACAGAGCCCTTCTGATTTCCCCACCACCCCAGGGGCTGTGTCCTGGGCGGGGAGGTTTGAGTCCTCAGGTGGGTGGACGACTTGGCGGCCACGTGCACCTGTTTTCTGTTCCCTCCAG
Seq C2 exon
GCGAGGCGGCCCGATCAGCTTCTCCTCCAGCCGATCAGGCCGGCGCCAGCTGCACATTGAGGGCGCGTCCCTGGAGCTGTCGGACGACGACACAGAAAGTAAGACCAGTGACATCAACGAGACACAGCCGCCGCAGTCCGAGTAAGTCCAAGGAAGCCGGAGGAAGCAATACTGCGGGATATGCAGGAAGTCATATGCAGGCCCCACCTTGGGGCCTCCTGCAGATCTGGGGAACCGGAGAGCTGCGAGACTCCTTCCTGAGAGATCAATTGTGTCTTAAGGCCTCATGGCCTACACACACGTCTCCTGCTTCAGATTTAGGTACAATTGCTCCCCTTTTTTTATATATATATATATACACAAAACCTACACATATTAAACAGATCGCCTCATCATTGCATCTATTTTCCATATATCCACCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAGGATGAAGCAGCTC
R:
TGACTTCCTGCATATCCCGCA
Band lengths:
354-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development