RnoINT0096336 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55404310-55406732:+
Coord C1 exon
chr10:55404310-55404482
Coord A exon
chr10:55404483-55405076
Coord C2 exon
chr10:55405077-55406732
Length
594 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTTGTGCATTTCTCTCCCAGGCG
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATGGAGAAAGCCAATGCCAGGATGAAGCAGCTTAAACGCCAGCTGGAAGAAGCTGAGGAGGAGGCTACACGTGCCAATGCATCTCGGCGTAAACTCCAAAGGGAACTGGATGATGCCACCGAGGCCAATGAGGGCCTGAGCCGTGAGGTCAGCACTCTCAAGAACCGGCTTAG
Seq A exon
GTAAGTGTTTGGTGAGCCATGGAGAGCTGACAGGCTTCATGTGTGGATTCCTCTAGAATCCCCACAGTCAAAACGCATGGCGTTTACAATAGCAAGTGGAAGAAAGCAGACATCTAGAGTCCACAGCCTCACTCAAGCAGGGCAAGAGCTCCCAGTTGACTCACCCACCAGCCTCCTCACTCCTCTCTGTCCAGTGAGGGAGCAGAGCATGGCAGAGTAAAGGGGGTACACACATTTGCCGGAAAAGCCAGCGAGCCAGCATAGGCCTCTGTCCTGGGGCAAAGGATGCTGGTGTCCTGCTTGTGTGGCCAGGAAGTTGAGCCTCTGATTTTAAAGGACTTAGAATACAAAATCAGAGTCTAAGCTCTGCTTCCCCTTTCAGGAAAGGCTTTCTGAGGGGTAGAGCTTCACCCTAACCTGTCTGCCTTACCATGTCGACCACGGTCACGTGCACTGTGGGGGGAAAGGAGGGGCTGGACAAGCTACCCACCAAGGCCATGATGCCCAGACAGGGTAGAGTAGAAGGTAGAGAACGAGCCTTGTTGAGGGTTGAACAACCCAGCAGCCTCATGTGCTTGTGCATTTCTCTCCCAG
Seq C2 exon
GCGGGGCGGCCCAATCAGCTTTTCTTCAAGCCGATCTGGCCGGCGCCAGCTACACATTGAGGGGGCATCGCTAGAGCTGTCAGATGACGACACAGAAAGCAAGACCAGTGATGTCAATGAGACACAGCCACCCCAGTCGGAATAGACACAGGCAGTCAGAGGTGATGCTGAGGACAGGCCGGAACCCAACCCAGCACTGGTCTGCTTGAGCCCTGCACTCGGGAGCGGCAAGCCCCAGGTTCCTTAAGGAAATCAACTGTGTCTTAAGGCTTTGCGGCCTGCGCAGACTGAATCCTGCTTCAGACTAGGTACAATTGCCCCTTTTATATATACACCTCCACAAGACATGCGTATTAAACAGATTGTCTCATCGTTGCATCTATTTTCCATATATTCATCAAGAGACCATTTTATGATGCATTAAGAAGAAAGAACCTTTTTGAAACAAACTCCAGACCCTTTGTTGCCAGTGGCTGGGCCTGGGGTTGCCCCGGGGACGTTGCTCAGTTGCTCTGCATGCTCTGTCCTGCCGACAGGTACCTTAGTTCTGTGTTCATGTGGCCCTGACCCTTCCACCACACCCGGTCTTAGAGCATTGTGAACCCAACCTGCACTTGTCTCTCATTTCCTCTGAATAGTGATCGCTGTCTCGGTGAGCAAACTGTGAGAAGGGCTTTGGCGGCTTAGGAGGGGTGGGTTTGGGTTGGGAAGCAGCATCCATTTGGGGTGACCCTGCCCCTCAAATTTATGGTGTCCCCACTGTCTCATGTGAATAGCCCCAGAGTTCTATGCACAGAGAGGACAGTGGCCTCAACATATAAGGTGCCCCAGGTGGCAGCCATCACAGTGACTTCCAGGTGGTCTCTGAGTGTCTGGCTTGATGATGCCCTCCCTCCTCAATTCAGGAGTGAGCCTCTGTGACCCTTGGGGTGCTCACAGAAGGCCTCTCCAACCAGTCAGGCCCTCTTGCAAATTCAGCCACTGCTTTGAGCCCAAAATGGGAATATTAGTTTTGTGTCGGAGGTGTGTTCCAAGTTTGTCAATGAGGCCACAGAGCCTCGAGAACAGATGCCATCTGCCTGAATGTTGACGCCAGTGGGCGTGTGCCCTCCATTTCCCTTCCCTCCTTTGGACAGTGTTACAATGAACACTTAGCATTCTGGTTTTGGTTGGTAGTTGAGCAGACTGACGTTACAGAAAGTGCCTTAGACACTGCAGCACTAAGACAATGTTAAATGTATTATTTGCCTCTAACAACTCAGTGTATTAGGTTTTGTCTGTGCTTTATATCATGTACCTCTGTAGTGAAGTAGAAACATTCAGTGACAGCAGCAAATCAGTGTTAATGACAAGCCCCGACCCGTGGCAATGTGCTCGAAAACACAGACCTTTTGGGTTAAAAGCTTTAACATCTGTGAGGAAGAATTGGTCACATGGGTTTGGAATCTTTGATTTCCCCTGTATGAATTGTACTGGCTGTTGACCACCAGACACCTGACTGCAAATATCTTTTCTTGTACTCCCATATTTCTAGACAATGATTTTTGTAAGACAATAAATTTATTCATTATAGATATTTGCGCCTGCTCTGTTTACTTGGAGGAAAAAGCACCCGTTGAGAACAAACAGACCTCAATAAACAAGAATAATCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCGGCGTAAACTCCAA
R:
TCCTTAAGGAACCTGGGGCTT
Band lengths:
345-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]