BtaALTD0014783-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15380621-15381999:+
Coord C1 exon
chr22:15380621-15380668
Coord A exon
NA
Coord C2 exon
chr22:15381955-15381999
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTA
5' ss Score
1
3' ss Seq
ACGTAGCTCATTATTTTCAGGTA
3' ss Score
5.99
Exon sequences
Seq C1 exon
GAGAGAAAGGCCTTGGGAAAACAACTGGAAAGAAGTTATGTTATAAAG
Seq A exon
NA
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAAAGGCCTTGGGAAAACA
R:
AACCACCATAAATTGATTCTCCACCT
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development