BtaALTD0014783-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15380621-15381999:+
Coord C1 exon
chr22:15380621-15380668
Coord A exon
chr22:15380669-15380728
Coord C2 exon
chr22:15381955-15381999
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
ACGTAGCTCATTATTTTCAGGTA
3' ss Score
5.99
Exon sequences
Seq C1 exon
GAGAGAAAGGCCTTGGGAAAACAACTGGAAAGAAGTTATGTTATAAAG
Seq A exon
GTTCTACATTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-5-4,6-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAAAGGCCTTGGGAAAACA
R:
AACCACCATAAATTGATTCTCCACCT
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development