MmuALTD0009400-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121637696-121638798:+
Coord C1 exon
chr9:121637696-121637743
Coord A exon
chr9:121637744-121637803
Coord C2 exon
chr9:121638754-121638798
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTATAACTCATTGTTTTCAGGTA
3' ss Score
8.32
Exon sequences
Seq C1 exon
GGGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAG
Seq A exon
GTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-5-6,6-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(27.5=100),PF132061=VSG_B=PD(66.7=70.3)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAAGGCCTTGGGAAAA
R:
ATCCACCATAAATTGATTCTCCACCT
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: