GgaALTD1015829-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1940509-1941437:+
Coord C1 exon
chr2:1940509-1940598
Coord A exon
chr2:1940599-1940616
Coord C2 exon
chr2:1941393-1941437
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCATGCTTTTTAATGCACAGGTA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAAAAAGGAATTGGCAAAACAACTGGGAAGAAGTTGTGCTACAAAGGCACTACGTTCCATCGCGTGGTTAAAAACTTCATGATTCAGG
Seq A exon
GTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-6-9,7-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTGGCAAAACAACTGGGA
R:
GCCACCATAAATAGATTCACCTCCT
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]