MmuALTD0009400-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121728578-121729680:+
Coord C1 exon
chr9:121728578-121728625
Coord A exon
chr9:121728626-121728685
Coord C2 exon
chr9:121729636-121729680
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTATAACTCATTGTTTTCAGGTA
3' ss Score
8.32
Exon sequences
Seq C1 exon
GGGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAG
Seq A exon
GTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-7-15,8-15,9-15-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(37.9=100),PF132061=VSG_B=FE(59.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(20.0=56.2),PF0016016=Pro_isomerase=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAAGGCCTTGGGAAAA
R:
ATCCACCATAAATTGATTCTCCACCT
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types