RnoALTD0020091-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130367970-130369049:+
Coord C1 exon
chr8:130367970-130368017
Coord A exon
chr8:130368018-130368077
Coord C2 exon
chr8:130369005-130369049
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTATTGTTCATTGTTTTTAGGTA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GGGAGAAAGGCCTGGGGAAAACAACTGGGAAGAAGTTATGTTATAAAG
Seq A exon
GTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-2-3,3-3,4-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(22.9=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAAGGCCTGGGGAAAA
R:
ATCCACCATAAATTGATTCTCCACCT
Band lengths:
84-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]