BtaALTD0014826-3/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000032369 | NMI
Description
N-myc (and STAT) interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr2:44930623-44939290:+
Coord C1 exon
chr2:44930623-44930747
Coord A exon
chr2:44930748-44930815
Coord C2 exon
chr2:44939201-44939290
Length
68 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TTATTTTTTATAATAATTAGGGA
3' ss Score
5.72
Exon sequences
Seq C1 exon
CATTTGAAAAAGGCTGAAGGCGCTTCCGGACAAGGGAGCCCCAGCCAGGCCCCGAGGGTTCCAGCGACTACCCGCGCTGCCAGCGAGGTTTCCGGGAACCTGGGCGCGGCGCTCGGCCGGCCGAG
Seq A exon
GCGCGTGAGTGGGCGACCCCTTCCCGCGCTGCCGTTCCTGCTCCTAGTGGGCCCGGGCTGGAGAGGCC
Seq C2 exon
GGAGTCATGGCAGCTGATGAAGATAACAAAGAACAAGTTCTTAAGGAATGTGAGCAAGCTGAAGAAATTATGAAAGATAAACAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032369-1-2,2-2,3-2,4-2-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.821
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF113763=DUF3179=PU(8.7=64.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGGCTGAAGGCGCTTC
R:
TTCAGCTTGCTCACATTCCTT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development