BtaINT0102353 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032369 | NMI
Description
N-myc (and STAT) interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr2:44930495-44939290:+
Coord C1 exon
chr2:44930495-44930553
Coord A exon
chr2:44930554-44939200
Coord C2 exon
chr2:44939201-44939290
Length
8647 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGTT
5' ss Score
0.61
3' ss Seq
TTATTTTTTATAATAATTAGGGA
3' ss Score
5.72
Exon sequences
Seq C1 exon
ATTGGAGAACCCGGTTTGGTATTCGACCAGTGACTAGACTGAAAGAAACTCATCCTTTG
Seq A exon
GTAGTTTTCTTCTTTTATTCTTTCTTTCTTTTTTTTAAAAGGAAGCAAACTGTTGATCCGCGAGCCATCCATTTGAAAAAGGCTGAAGGCGCTTCCGGACAAGGGAGCCCCAGCCAGGCCCCGAGGGTTCCAGCGACTACCCGCGCTGCCAGCGAGGTTTCCGGGAACCTGGGCGCGGCGCTCGGCCGGCCGAGGCGCGTGAGTGGGCGACCCCTTCCCGCGCTGCCGTTCCTGCTCCTAGTGGGCCCGGGCTGGAGAGGCCGTGAGTGGCGACAAGGCGGGCTCCGCGGGGCCGGGGACCTCCGGGAGGGTTGAGGGTTGGTGGGGACGCCTGGCGGAGAGTGGGGGGGTCGTTGGCTCTGCGCCCTCCTCCCCTGCGCCGCCCTCCGGCGCTGCCCGCTGCCGAGGTCGTGGGGACCACCTAGCCGCCGAGGGGGCGCGCCTGCCCCCTGCCCGCGGGGCTTTCTGCCTGCAGTCCAGGCCTCTGACCCCGTCTCCTTTGCTTTGCTTCATTTAGGAAATTGAAACTTAAAATGGTTTGTGTTTCCCCACTGTTTCTGTAGTGTCTCTGGAGAAAGTTCTTAGGAAAACAGATTCCTTAGGGAGATTTAGTCTCTTGGCAGGCGCAGGGTTTGGCAGTCGTACCTGATTTTTCAGAACATACAGGGATTTTATTTAAAGAGACATCCAAAACAGAATGTGGTGTTCCCCTATCTATGCGACACACATAAGTTAAAAAACAACAAGAAGCAATCGTGTCTGCATCTCCACCTCCTTTTTTCCTGCCTTTGCCTCATTTCCTTGTTTTTGCTGCCAGGCATGCGTATGGGAAGCTTTGCCTCTATCAGTCCTGGCACCACAGTGAATATGTTAGGGAAATAGGTGGTGAACAGGTGGAGGTGATTTGTACTGTTTTTTTCATTTGCTGCCATAATAAATTACCATGGACTCAGTAAAACCTTAAAAGCTACAGATTTATCTTAAAATTATGTATGGGGGATTTCCCTGGCTGTCCAGTGGTTAGACTTTGTGTTTCCATTCCAGAGGTCGTGGGTTTGATCCCTGGTCGAGGAACTAAGGTCCTACATGCCCTGCAACCTGGCCAAATTACCACCAAAGAAAAAAAAAAAAATTCAGTATAAGTCTGGGTGGGCGTCGCTAGGTTAAAATCAAGGTGTCAGCTGCTCTGCCTACCTTTCTGGAGACTAGTGGTGTGAACCTGTTTTCTCGTCTTTTCTGCTTCTATAGATTGCTCATCTCCTTTGGCTCAGTGGTGCCCTTTCTCCATCTTCAAAACCAACAGCATTGCATCTCTCTGACTATTTTTCCCTTGTCACGTCTCACTCTGATTCTGCTCTTCTGCCTTCCTCTTTCACTTTGAAGAAGGACCCTGGTGATTACATTTTTCCCCACCAATAATCCAGGAAGAGCTTTATATTATAAAGTCAGCTGTAAATTAGCAACCTTAATTCAGTCTATAACCTTAGTTCTCCTTTGCAGCATAACCCAACATTTTCACAGACTATGGGGGCTAGGATGTGGACCTCTTTAAAAGGGCCATTATTTTGCCTACCTTTGAGTGCATAAAAGGAAAGCTATTACTATACATCCCATTCGTCAAGGAGGGAAAGTATCCAGATACTAGATATGCTGTAACAAGTTCTGGGAATATGATGTAGTAGACCATTTATATGAGTTAAATGTATTATGGAGAGCTTTTATTACAAGCATTTAAGAATAGACTTAAAAAAGCAGTTAAAGAACGTTGCAGTTTCTGCTTTCTGGAAATGTAATGAGAACATTGCATAGAACACTGCATGCCCCAGGTGTCCGGGGCTGAGCAAATACCTGAGTCAAGATACCAGGCAGTCCTATAAACATTAAGTGTTTTCAGTATGTGAACTCGCTCTCTGAATGAATACAAGGAAGAGGGAATGTAGTCCCTGGCCTCAAGGTCATGACCATCTTGCCATGGAAAATGACACAAGTACACAAATAAAGCTCCCCAAAAGAGGTTATGGGGGAGAAGTAACATCATCTGGGGGAATCAGAAACGACTTCAAGAACTTGGGTGGGGAGGGGGGGATTTGGGATGGACATTGAAGAACAGTAGGATTTCATTAAGTGGAAATTAAGGTTGGCAGGGGAGGGAGGATGTGACATTGAGGGACATGAGGGAGAAGAGAAACCCTTAGATTGTTCAGTATGGTTAAGGAACCTGGTCCAGGAGTTGTCTAAATAAGACTCAGTTCAGTTCAGTTCAGTCGCTCTGTCATGTCTGACTCTGCGACCCCATGAACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCGGAGTTCACTCAAATTCACGTCCATTGAGCCGGTGGTGCCATCCAGCCATCTCATCCTCCGTCGTCCCCTTCTCCTGCCCCCAGTCCCTCCCAGCATCAGAGTCTTTTCCAATGAATCAACTCTTCGCATGAGGTGGCCAAAGTAGGACTGCTACTGCTAAGTCGCTTTAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCAGTAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCCTCTCCAGTGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCGACTCTTAGCGACCCCATGGACTACAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGGAAGAGTACTGGAGTGGGGTGCCATTGCTTCTACCTTCTTCTAGTCTTCTAGTAAGACTGCTGCTGCTGTCACTTCAGTCGTGTCCAACTCTGTTCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGACTAGTTGGGGTTAAATTGTGTAAGATCTGGGATGAATAGGGTTGTAAAGACTCTGCAGTTGTTGATGCGATAACAACTACTAATATGTATCTTAAAAATTTTTTTTTGAACCCTTTCAAACTTACAGAAAAGTTACAAGTAACAACTTTTCTTTTTCTTGAGTTATTTGAGTGTAGGTATCATGACCCATTAACCTGGAAGTCTTGAGTATTTATTTCCTGTAAGAAAAAAAAAAAAAAGAAAAGGTGTTCTTTACATAACTACAATACAGCGATCAAGATCAGAAAATTAATATAGGTACATTAATGCCATCTAATCCTTCAATCTAGTTTGAATTTTGCCAGTTGTCCCTGTTACATAGTGTATAGCAAACAGAGTTAAGAATTATGCCTGGTGTTTAGTTACGATGTATCTTTAGCCTCCTGTCTGGGACAGTTTCTCAGTCTTTACTTGGCTTTCATGTGCTTAACACTTTTGAAGAGAACAGGTCAGTGTGTTTCCTGTTTCCTCATTCTTAGATTCAGCTGATGCATCTTTGGCAGGAATATCACAGAAGTCTTGCCGTGTTCTTGGTGGGCCTATCATATGTCAGATAATTTGGATGTATCTCATTATTTACTTTGACTACTTCATTATAGTGGCGTCTGCCTGGCTTCTTCACTAAAATTTACTCCGTTCCCCTTTGAAATTAATAAGTGTTTTTTTGGGAAGTATTTCTTTTGTTATTGTTTTGCTTTAAGAAGCTTTCTTCATAGTGACGCCCAAACTGAAAACAACCAAATACCCACCACCAGGAGAATGGATAAACCAAGTGTGAACTATCCATGCAAGGAATACTACACAGCAATAAAAAGGGATAAGCTACTAATACATGCAATAACATGAACAAATCCCCAAAACATGTTGAGTTTAAAACTTTAGCACATATAAAAGGATACATGCTAAATTATTCTACTTATGTGAAGTTCAAGAACAGGTTGCTTAGTGTAAGGAAACTTTAACACAATTTAAAGATATCATTTCTTGAGTACAAACTATGTTCCTAGCATTCTTTTGGTACTGTTCCAGTATTGTTCTGGATGAAGTAGGGCATACTTTTGAGAACAAAACAAAAATCACTGCCCTTGTGGTGCTTATATTCTTGAAAATCAGCTTGATATGTTCAGTGCAAAAGGGCCTGCTGATAGTTACCCCTACTGAAGTTGTTGATCTCCTGCAGAGCTGGTGAGTGCCAGAACTGGTGAGTACTCAAAACACCTAAGTGATTGAGATTGCACTTGAATTTGGTTAGCAGTACTTGTGGGCAAGTATTTTAAGCTACTTAAATGGTCCTTTTTTCATGAAAATATCAACCTATCTATCTGTTTTAGTACTAAGTGGATTTAATTATTACTGTCATTTATCTCTATGCTTAATCAATTTACCCAAATTTTTCCAGTAAGAACCCCCTCAAGCTGGACTCCGTTCTTGTGACATATTCTCATCATTCTTTGAGCACTTTTTGCTTTCTGGCATCATAAGATGCTTGTCTTATACCTTTCCTGTCCCAGTTCTAGAAACGGCCATTTCTCTGAATAGCCTTGGTTCCTGGTAGCTGAGAATGGTATTAGAAACCACATTCTGGATGCTAAATGTGCTCATTGCTATTGTCTTTGTTTCCAGGCCCTTTTAGCAGACAGAACTGGGAAATATCACATGTATGCACACTTATACCTATATTTAAATTTCTGTATTTTCCTATCAATCCATCAGAAATCATGAGGTTATACTGATATCTCCAGTTCCATTTCATAGCATTAATTCTATTTTTCTCCCTTTCCGTATTTACAGTCACCTTCTCTGACAATGAAGAACCTGGCTCCTATTGTCCTCCACATTTTTACTTACTTGATAAATCACGTTTATGTACCTTTGGCCACTGGGAGCCTCCGTGCTCATCTTGTGTATTCCTGCCATTTTGAGGGCTCCTTTTTGCTCAAAGGAGATCCTTTCATTGGAAACTAGATTAGAAGCCAAGATCTAGGTGCTTCATGACTGCTGATGCTTCTTTTTTTCTTTTTCTGGTGTTACTGAAAAATAATTGACATACACCACTGTACAAGTTTATAGCATGATGGCTTGACTCACACATATTATGAAATGATTACCATATTAGGTTCCGCTAACATCCATCTTGTAATATAGATACAAAAAAAAAAAAAGACAGAAAAAAATTTCTCCTTGTGATAAGAACTCAGGATTTACTCTCTTAACAACTTCCTTATGTATCATAGCAGTGTTAGCTACAGTCATCATGATGTACATTACATACCTACTACTTATTTATCTTATAACTGGAAGTTTGTAGCTTTTGACCACTTTCCTCTAAATCACCCTCCATACCACCCTCTACCTCTGGTAAGCACAGATCTGGTCTTTTTCTTCTATGAGTTTTATTTGGTTTCTTTTTTTTTTTTAGACTCTATATGTGAGATCATACAATATTTGTCTTTTTCTGTCTGACTTAACATCATGCCTTCAAGGTCCATCCATGTTGTTGCAAATGGTAGAATTTCCTCATTTTTTTATGGCTGAATAATATCACAATGTATATAATCACTATATATATATATATATATATATATATATAGACACACATACACACAACACTTTGTTTATTCATTCATCCACTGATGGACACGTAGGTTGTTTCCATGTCTTGGCTATTATAAATAATGCTGCAATGAACGGGGGATACAGAAGTCTTTTCAAGTTAGGATTTTCTTTTCCTTTGGGTATATTTCCAGAAGTGAAGTTGGGAAGTTACAGGACCATATTAAACTAAACAGCTTCTGTGCAGTAAAAGAAACCATAAACAATGTAAAAAGACAGCCTATGGAATGGGAAAAAATATTTCCAAACCATGTATCTGATGTATGTATATGTACAGTGCTTTCATGTCAGACTCTTGGCCACCCTTTTGACTGTAGCCCGCCAGGCTCCTCCGTGCATGGAATTTTCCAGGCAGGAAAATCCAGTCCATTGGAGTGGGCTGCCATTTCCTTCTCCAAGGGATTGTTTTGATCAGGGATCAAAACTGTGTCTCCTGCATCTCCTGCATTGCAGGTGGATTCTTTACCTGCTGAGCCACAGGGGAAGCTACAGTATATCTGATAAGGGGTTAATATCCAAAATATATAAAGAACTCATGAAACTCAATACCAAAATATAAAATAACTCAATTAAAAACTGGGCAAAAGGACTTAAAAAGACATTTCTCCAAAGAAGGTATATGATAGATCTATAGGAACATGAAAAGATGCTCAACATTACTAATCACTAGTGCAAGGTAAATTGAAATCCCAGTGAGATAACACCTTACATCTTTTGGAATGGCCATCATCAAAAAGACAAGAGTTAACAAATGCTGTGAGGATGTGGAGAAAAGGGAACCCTTGTGCACTCCTGATGTGAATGTGTAAATTGGTGCATTCACTATGGGAAATAGTTATGGAAAATCCTCAAAAAATTGAAAGTAGAATTACCATATGACCCATTTTTTGGACACTGCTTGGGTTCACACTGAGTAAACTAAGCCATAATTAATTTTTTGCTAATCTTCTATTGTATTTTTAAAGAGGAATACCTGTGTTTTCTGTTTGTTCTATAGGAATAGTGAGAATTTAGTCAGTTGAAATCTTGGAAGATTGTGTTGATAGACACATTATTAATATGCTTCTAAAACAGTAAAAATAGTTGTGATATTCCTTGTGTCGTGTTTGATCTGGGACTTCCTCATTTAGGTAAATTCATATGCAGGCAAGACTTTTTACTCTTTTGATGTCAGTCTGATAAAGCCTATGAGCTTTTCTCAAAAAGTATTTTAAGCAGTCTAAAAGAAAATACAGAGAATTATATAGGAAACCAATTATATTGAAATATGATTATCAGTGTTATTTAAAAAGCAAATTTTTAATTTAGTAATGTATACCAGTATACTGATACCTTCCCAGGTGGCGCTAGTGGTAAAGAACCTGCCTGCCAATGCAGGAGACCCAAGAGGCTGGGGTTCGATCCTTAGGTCAGGAAGATCTCCTGGAGAAGGGCATGGAAACCCACTCCAGTATTCTTGCCTGAGAATCCCATGGATAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCGCAGAGTCGGACACTGAGCGACCAACACTTTACTTCACTTTCTACTTTACCGGTATACTACAGTTGATTATAAGACTGTATTATTATGATCTTCGCTGGGTCTTCGTTGCTGTGAGGGCTTTTCTCTGGGTGTGGTGAGGGAGGGCTACTCTAGTTGCAGGGCTTGGGCTTCTCATTGTGCTGGGTTCTCTTGCTGCAGAGCATGGACTCTAGGGCACAAGGGCTTCAGTAATTGAGGCACATGCCCTGGTGACTTTTGTCACGGGTGCTGCAAATACCATGTGACCTGTTGCCTATATTCATATTTGAAGAGAATGCCATTTCAATCAGAGATTTTTAGCAATAAATATGAATTTTTTTTTTTTTCATGTTCAAGTGTATGAACTCAGGGGAAGTTTTATGAAAACCTCTGTTATCATAGAGGAAAGGTGTTTGGAGATATTTTCACTCTGTTACATTCTTGGAGTATAATAAGGAGAATTAAATATTTAAATTAAAGCCTTTGGAAAAAGTCTAGAGGACTGAAATAATAGTCTTTTAAAATGGAGCGTCATATCATGATTGAGATGAGAACTACAAAGGAATGTTAATACCTATTGTTTTATTATGGTATTGAAATGCAAAGGATTTTTAGAACCTTTTAAATATTTATAGATGTGAAAGTTATTTGAAATACAGAATTTGTTTGAATATAATTCACATGATAATAAAGACTTTGGTGGTAGGGGAAAAGATATAGCAAAGAAGAGATGTTTTATCCATAAAAGGGTAAAAGATATTTGTTCTTCTTGACTTTGTGTGTATGTACCATTTTTGAAGTATTTATTTATTTTAATTGGAGGCTAATTACTTTACGAGATTGTGGTGGTTTTTGCCATACATTCACATGAATCAACATGTGTTCCCCATCCTGAACCCCCCTCCCACCTCCCTCCCCATCCCATCCCTCAGGGTCATCTCAGTGCACCAGCCCTGAGCACCCTGTCTCATGCATCAAACCTGGACTGGTGATCTGTTTCACATATGATAATATATATGTTTCAATGCTATTCTCTCAAATCATCCCACCCTCGCCTTCTCCCACAGAGTCCAAAAGTCTGTTCTTTACATCTGTGTCTCTTTTGCTGTCTCACATATAGGGTCATCGTTACCATCTTTCTAAATTCCATATATATGCGTTAATATACTGTATTGATGTTTTTCTTTCTGACTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTAAAATGCATTCTTTTTAATAGCTGAGTAATACTCCATTGTGTATATGCACCACAGCTTTCTTATCCATTTGTCTGCTGAGGGACATCTAGGTTGCTTCCAAGTCCTGGCTTTTGTAAACAGTGCTGCAATGAACACTGGAGTATACATGTCTCTTTCAATTCTGGTTTCCTCAGTGTGTATGCCCAGCAGTGGGATTACTGGGTCTTATGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACACACTTCTCCATAGTGGCTATACTAGTTTGTGAAGTATTTATTTTTTATAATAATTAG
Seq C2 exon
GGAGTCATGGCAGCTGATGAAGATAACAAAGAACAAGTTCTTAAGGAATGTGAGCAAGCTGAAGAAATTATGAAAGATAAACAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032369:ENSBTAT00000021580:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.821
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF113763=DUF3179=PU(8.7=64.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]