BtaALTD0014902-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26995678-26995992:+
Coord C1 exon
chr23:26995678-26995750
Coord A exon
chr23:26995751-26995759
Coord C2 exon
chr23:26995854-26995992
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
CCCTTGTTCTGATCCCCAAGGCT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GGCACTGAAAGCAGAGGCAGACATGGATGAGGATGGTGTTGTGATGTGCTCAGTCCCCAAGGAAGGAGAGGAG
Seq A exon
GTGGGCCAG
Seq C2 exon
GCTGAAGAAATGGCCTCACCCCCCAAGTGCCAGCTCTGGTCTCTGAGCAGTGACTGCCAAGAGCTCCCCCAGGCAGCCATGCTGACTCCTCCCCAGGATTCTGAGATGGATGTCCCTGACGTGGACACCCAGGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-27-32,28-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAAAGCAGAGGCAGACA
R:
GGGGTGAGGCCATTTCTTCAG
Band lengths:
93-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development