MmuALTD0009484-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015468 | Notch4
Description
Notch gene homolog 4 (Drosophila) [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34721726-34722074:+
Coord C1 exon
chr17:34721726-34721795
Coord A exon
chr17:34721796-34721804
Coord C2 exon
chr17:34721936-34722074
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
GTCCTTGCTCTTGCCCCAAGGCT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GGCACTGAAGCCAGAGGCCGAAGTGGATGAGGATGGAGTGGCCATGTGCTCGGGCCCTGAAGAGGGAGAG
Seq A exon
GTAGGCCAG
Seq C2 exon
GCTGAAGAAACAGCCTCAGCCTCCAGGTGCCAGCTTTGGCCGCTCAACAGCGGCTGTGGAGAGCTCCCCCAGGCAGCCATGCTGACCCCTCCTCAGGAGTGTGAATCGGAGGTTCTGGATGTGGACACCTGTGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-29-29,30-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.617
Domain overlap (PFAM):
C1:
PF076847=NODP=PD(2.3=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAAGTGGATGAGGAT
R:
CAAAGCTGGCACCTGGAGG
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: