BtaALTD0014999-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000018007 | NR2F2
Description
Bos taurus nuclear receptor subfamily 2, group F, member 2 (NR2F2), mRNA. [Source:RefSeq mRNA;Acc:NM_174402]
Coordinates
chr21:10797318-10800183:-
Coord C1 exon
chr21:10799457-10800183
Coord A exon
NA
Coord C2 exon
chr21:10797318-10797845
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCCG
3' ss Score
12.15
Exon sequences
Seq C1 exon
GAGCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACGGCAGCCGGCGGCCAGGGCGGCCCTGGCGGGCCGGGTAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAAGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
NA
Seq C2 exon
CCGTGCAGAGGGGCAGGATGCCGCCCACCCAGCCGAGCCACGGGCAGTTCGCGCTGACCAACGGGGACCCCCTCAACTGCCACTCCTACCTATCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATTTGCGAACTGGCCGCGCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACCGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAGCTGTTCGTTCTGAACGCGGCCCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTCCACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTAAAAGCGCTGCACGTCGACTCCGCCGAGTACAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018007-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGGAACTGTCCCATCG
R:
AGGTAGGAGTGGCAGTTGAGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development