RnoALTD0020426-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010308 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:RGD Symbol;Acc:69305]
Coordinates
chr1:131451933-131454689:-
Coord C1 exon
chr1:131454064-131454689
Coord A exon
NA
Coord C2 exon
chr1:131451933-131452460
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCG
5' ss Score
8.7
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
CCACCCCGCCGCCGCCCGCAGCCAGGGGAGCAGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCGGGCCCGCCGCCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACAGCGGCTGGCAGCCAGGGCGGCCCTGGCGGCCCAGGCAGCGACAAACAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
NA
Seq C2 exon
CTGTACAGAGGGGCAGGATGCCGCCCACCCAGCCTACTCACGGGCAGTTTGCACTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCAGCACAGTGCTCCATGCCCCTCCATGTTGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTACAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010308-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAACCTGAGCTACACGT
R:
GTGCAAACTGCCCGTGAGTAG
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]