BtaALTD0014999-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000018007 | NR2F2
Description
Bos taurus nuclear receptor subfamily 2, group F, member 2 (NR2F2), mRNA. [Source:RefSeq mRNA;Acc:NM_174402]
Coordinates
chr21:10797318-10800183:-
Coord C1 exon
chr21:10799457-10800183
Coord A exon
chr21:10799383-10799456
Coord C2 exon
chr21:10797318-10797845
Length
74 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCCG
3' ss Score
12.15
Exon sequences
Seq C1 exon
GAGCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACGGCAGCCGGCGGCCAGGGCGGCCCTGGCGGGCCGGGTAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAAGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
GTATTGGCCTCTCATTTCTCCTCCCCTCGCCCGGGGTCCCGGGGCCCTGGGTGCGTTTGGCTAGCCTGCTCTGG
Seq C2 exon
CCGTGCAGAGGGGCAGGATGCCGCCCACCCAGCCGAGCCACGGGCAGTTCGCGCTGACCAACGGGGACCCCCTCAACTGCCACTCCTACCTATCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATTTGCGAACTGGCCGCGCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACCGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAGCTGTTCGTTCTGAACGCGGCCCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTCCACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTAAAAGCGCTGCACGTCGACTCCGCCGAGTACAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018007-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGGAACTGTCCCATCG
R:
AGGTAGGAGTGGCAGTTGAGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development