MmuALTD0009542-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000030551 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
Coordinates
chr7:77502649-77505479:-
Coord C1 exon
chr7:77504774-77505479
Coord A exon
chr7:77504700-77504773
Coord C2 exon
chr7:77502649-77503176
Length
74 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
CCACCCCGCCGCCGCCCGCAGCCAGGGGAGCAGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCGGGCCCGCCGCCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACAGCGGCTGGCGGCCAGGGCGGCCCTGGCGGCCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
GTATCGGCCTCTCATTTCTTCCCCCTTCGCCCGCGGTCCCGGGGCTCTGGGTGCGTTTGGCTAGCCTGCTCTGG
Seq C2 exon
CTGTACAGAGAGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTATAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030551-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTCCCATCGACCAGC
R:
GACAGGTACGAGTGGCAGTTG
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: