BtaALTD0016195-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000000033 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr19:37978568-37979980:+
Coord C1 exon
chr19:37978568-37978668
Coord A exon
chr19:37978669-37978801
Coord C2 exon
chr19:37979882-37979980
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCTTCTGTCCTCTGCTCTAGCCT
3' ss Score
9.67
Exon sequences
Seq C1 exon
AGACGCATATCATCCACGGCCCCTCCGGACTGGAGGGACTCGTGAGAGCCGAAGCCCAGAAATCCGGGGGTGGATAAGACACCGCATCCCCTCCAATTCCC
Seq A exon
GTAAGCACCCCTTGCTCCATCCTGAGCCCAAATACCTCAGCTAGCCCGTGTCCCCCTACTCTTCACACTCCAAACTCAGCCGGGACAGACCTCTGCTGCCGCCGCTCCCCACGTGAGTCCTGGACTCGCCGAG
Seq C2 exon
CCTGCTGGAAAAGCTCAGAGGTCCTGTCCCCCTTTCCTCTGAGGGACTGTATTTGGTGACCACAAGAGGATTCAATCACTCAGGAGAAAGTTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000033-1-0,2-0,3-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCATCCACGGCCCCTCC
R:
CTCTGGAAACTTTCTCCTGAGTGA
Band lengths:
194-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development