BtaALTD0016818-2/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101650199-101651158:+
Coord C1 exon
chr11:101650199-101650299
Coord A exon
chr11:101650300-101650349
Coord C2 exon
chr11:101651003-101651158
Length
50 bp
Sequences
Splice sites
5' ss Seq
GCAGTACGT
5' ss Score
6.49
3' ss Seq
CTTTTCCTCTGCTTTCCCAGGGC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCGCGGCGAGTTGAGCGTCGAGCGGGCCAGTGGGCAACAAAGAGTGCCGAGCGGCCTCACCCCCTACCAACGGTCGGCCTAGCCGCTCACCCCCGCCCCAG
Seq A exon
GCAGGTCTGAGGCGCAGGGAGCGGCTCTGCGGGGACCTGAGGAAACAGCA
Seq C2 exon
GGCATCCTCCTCCCCCGGCCGGCTTTTCTGCAAGATGTTGGGGTTCTTGCAGCAGCCTGTGATGGTGACCGCTGAGGTGAACTTGAATATGGTAGCTCTGACCGCGGTGGGATTGCTGAGCCGACTATGGCAGCTTGCCTATCCAAGGGCCGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805-0-0,1-0,2-0,4-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0236613=PMT=PU(25.3=51.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCAACAAAGAGTGCC
R:
CATCACAGGCTGCTGCAAGAA
Band lengths:
137-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development