BtaINT0115655 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101650163-101651158:+
Coord C1 exon
chr11:101650163-101650349
Coord A exon
chr11:101650350-101651002
Coord C2 exon
chr11:101651003-101651158
Length
653 bp
Sequences
Splice sites
5' ss Seq
GCAGTACGT
5' ss Score
6.49
3' ss Seq
CTTTTCCTCTGCTTTCCCAGGGC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCAGGCGCGCTGCACCCTCCCTGGCAGGCGCCCCTGGCGCGGCGAGTTGAGCGTCGAGCGGGCCAGTGGGCAACAAAGAGTGCCGAGCGGCCTCACCCCCTACCAACGGTCGGCCTAGCCGCTCACCCCCGCCCCAGGCAGGTCTGAGGCGCAGGGAGCGGCTCTGCGGGGACCTGAGGAAACAGCA
Seq A exon
GTACGTTTGTGGCGCCGGGGGCCAGAGCCCAGGCGGGCCTCCCGGGCAGGTGAAACCCTCGGGAGAGAAGCGGAGTGCCGGGCAGAGGAGCGGGGCTCCCAGGGGGGACAGGGTCCCCGGAGAGAAGGGGGTGCCCTGGGCAGACGTAGCAGCAGGAGGGAAGCTTGTCGCCCTGAGGACAGAAGGGGCCGCCGCAGGCCCGAGGCGGCGTTGCTGTCAGAACGCGGGGGAGGGTGGTCCCCACGGCACCTGCGGCCTCCAGAGAAAAGTGGACCCGAGGGATGGGGGGAGCCTCGGGAAAGAAACGGGGTGCCCGGTGTAGACGCGCCCTCGAGGTGAGAAAGGCGGCGCGGCGGGAGGGCGGCCCTTGGCGCAGACGGGGAGGCTCTGAGTCTCGGGGAGTGGGGGCGGACGGAGGTCACCGGCTGTCAGCCGGCCACACTGCCCAGGCGGGCAGGGGCCCCGGGTCCTACGCTGTCACTGACCAGAAGGGCTCCGCAGATGGTGCTGGAGTGAGGGGCTTTTTAGCCCTGAGGTGGCCACCTCACCGCGTGTGACTGCTTGTGAAAGAGGGTCCTGATGTCACAGCCTCCTCCTAGCCTTCAAGGGAGCCACCGGTGTTCTTGGTGATAGCTTTTCCTCTGCTTTCCCAG
Seq C2 exon
GGCATCCTCCTCCCCCGGCCGGCTTTTCTGCAAGATGTTGGGGTTCTTGCAGCAGCCTGTGATGGTGACCGCTGAGGTGAACTTGAATATGGTAGCTCTGACCGCGGTGGGATTGCTGAGCCGACTATGGCAGCTTGCCTATCCAAGGGCCGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0236613=PMT=PU(25.3=51.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCCTCCCTGGCAG
R:
ACCACGGCCCTTGGATAGG
Band lengths:
334-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development