GgaINT0124510 @ galGal3
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6848665-6849841:+
Coord C1 exon
chr17:6848665-6848788
Coord A exon
chr17:6848789-6849697
Coord C2 exon
chr17:6849698-6849841
Length
909 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTGCTTCTCTGTTCTTGAAGGCT
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTAGCAAGAAACAAGGACGGTGGCACTGCATTTGGTGGTGGTGATGTGCTCGCATCCTGCTTTGCTCACACCTGATGAAAGCCATGCAAAAGAATTTATTCCAGTAGCTTTTGGTGATACTGAG
Seq A exon
GTGAGGAGCTGCAACACTGATTCCCTGGTATTTCCTGACAGCACGTGTAGCTTCTAGTGGTTCTGCTTAGAGAACAGTTCAGTCCTGCATTCTGCAGCACTCCCCCAATAGGCTGCGCTGTAGTCCTACATCACCTTCGGGTTTCCCATAGGCAGCTTTGGGGGAGTGTTTGTGGGTCCATCCTGTGAGCAAATACACCCAGTTTGCAAGGAAGTAACCCTTCTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAGCGTGTGACTTTTCTATCAGCAGCATCACTTTGGGCTAAGAGCATTGCTTAGCACAAAGAGAGGAGATTTAGATTAGATGTTGGGGAACCACTGTGAGGGTGGTGAGGTGCTGGCACAGGCTGCTCAGAGAAGTTGTGGCTGCCCCATCCCTGGGGATGTTAAGGGTCGGGTTGGATGGGGCCCTGGGCAGCACTGGGATGTTAAGGGTCGGGTTGGATGGGGCCCTGGGCAGCCTGATCTAGTGCCTAGATCAGTGCCTAGATCAGTCTGATCTAGTGGGTGGCAGCCCTGCCCACAGTGGGGGGGCTGGAACTAGATGATCTTTGGGGTCCCTTCCAACCCAAGCTCTTCTATGATTTCAGCTTACTATTGAGGATAGAGACCTACATGCACAAAGGAGTAGGGCAAGTGAAAAGTTAAGTGTGGGATAGAGGGCAGAGGGTAGTTTAGTAACTCCATTCTCAGAGCTACTGCGGCAGCTACAGCTGAAAACACACATTGAAAACAAGAGGACAGAAGATAGTTACCGTGAGCTGCAAGTAGTGGAAAGTGGCAGTGCGTGCTTGCTGTCAAATGATCTTCAGCTAGCAACCAGATTTTGAGTGAAATGGTGATTGCTGTGCTTCTCTGTTCTTGAAG
Seq C2 exon
GCTTGGACAGACCTTTGACAGGATGTTGGGATTTCTGAAGAACCCAGTTGTGGTTACTGCAGAGATAAATCTCAACCTTGTGGTGCTGACTGTCATGGGATTAATAAGCCGTCTATGGGGGCTTTCCTATCCACGTGCTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005965:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0236613=PMT=PU(8.5=51.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAAACAAGGACGGTGG
R:
ACAGCACGTGGATAGGAAAGC
Band lengths:
263-1172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]