BtaALTD0017341-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53237097-53237862:+
Coord C1 exon
chr22:53237097-53237220
Coord A exon
chr22:53237221-53237253
Coord C2 exon
chr22:53237600-53237862
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GACATGTCCTCTTCCCACAGCCG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CGTGCGGCCAAGTGTTCCTGAAAATCTTGGGAGGACACGACAGCGAGGAAGGGAAGTGGCCCTGGCAGGTGAGCCTGAGGGTCCGTAACAGACATGTGTGCGGAGCTTCCCTCGTCACAGAGAG
Seq A exon
GTGGGTGCTGACTGCAGGCCACTGTATTTTAAG
Seq C2 exon
CCGTTACCAGTACAGTGTCACGATGGGAGATCGGAAACTCCAGGGTACATTATCAGGGTTGGTGGTCCCTGTCAGCCGCGTCGTCGTTCACCCTCAGTTCTCAACAAGTGGAACCGTTAAAAATGACCTTGCTCTTCTCCGGCTCCGCTACCCTGTAAATTTCACTGGCGTTATCCAGCCTATATGCATCCCTGAGAAGACTTTCCGCGTGCAAGCTGGGACCAGGTGCTGGGTGACCGGATGGGGAAGGAAGCAAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCCCTCGTCACAGAGA
R:
GAACTGAGGGTGAACGACGAC
Band lengths:
122-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development