MmuALTD0011135-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine, 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110701216-110701924:+
Coord C1 exon
chr9:110701216-110701283
Coord A exon
chr9:110701284-110701372
Coord C2 exon
chr9:110701662-110701924
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCAACACATTTTTTCCATAGCCG
3' ss Score
5.55
Exon sequences
Seq C1 exon
TGTGTGGCCAACCCTTTATGAAGATCATGGGAGGGGTAGACGCTGAAGAGGGGAAGTGGCCTTGGCAG
Seq A exon
GTGAGCGTTCGGGTCAGGCACATGCATGTCTGTGGAGGTTCCCTCATCAATTCCCAGTGGGTGCTGACTGCCGCCCATTGTATTTACAG
Seq C2 exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGGGGAAGTGGCCTT
R:
CACAGGGTGTTGGAGCTTGAG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: