BtaALTD0017813-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96092488-96095114:+
Coord C1 exon
chr11:96092488-96092546
Coord A exon
chr11:96092547-96092550
Coord C2 exon
chr11:96094957-96095114
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
ATATATCCTCCCTTTGGCAGGTA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GACATCATGAAGCAGCTGCCAGTCTTGGAGCCTGGAGACAAGCCCAGGAAAGAAACATG
Seq A exon
GTCT
Seq C2 exon
GTACACCCTGACCCTGGTTGGAGACAGCCCCTGTGCACGGGTTGGTCACAGCTGCTCATATTTACCCCCTGTTGGTGATGCCGAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAGATCCAAACAGAAGCTTCTCAGATGTGCACACCATAGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098-2-2,3-2,4-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764610=Kelch_2=PU(77.4=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAAGCCCAGGAAAGA
R:
GCATCACCAACAGGGGGTAAA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development