RnoALTD0024827-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13859746-13861900:-
Coord C1 exon
chr3:13861842-13861900
Coord A exon
chr3:13861838-13861841
Coord C2 exon
chr3:13859746-13859903
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
TTATGTCTTCCCTTCGGCAGGTA
3' ss Score
9.78
Exon sequences
Seq C1 exon
GGCACCATGAAGCAGCTGCCCATCTTGGAGCCCGGAGACAAGCCCAGAAAAGCTGCATG
Seq A exon
GTCT
Seq C2 exon
GTACACTCTGACTTGCCCTGGAGACAAGCCCTGCCCTCGAGTTGGCCACAGCTGCTCGTATTTTCCCCCAGTTGGCGAGGCCGAGAAAGGGAAGGTCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGCTTCTCAGATGTACACACCATGGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591-7-7,8-7,9-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764610=Kelch_2=PU(77.4=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCCAGAAAAGCTGCAT
R:
CTGGGGGAAAATACGAGCAGC
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]