RnoEX0073383 @ rn6
Exon Skipping
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13855895-13864865:-
Coord C1 exon
chr3:13864541-13864865
Coord A exon
chr3:13861731-13861900
Coord C2 exon
chr3:13855895-13856047
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTCTTCCGCATAGGGC
3' ss Score
9.94
5' ss Seq
GTGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GCAAAGCCTAGCACCACTCGGGAGGCTGGAGCAGAATTCAAGGTCAGCTTGGCTTACATGAGTTCCAGTCCATGCTTTCCATTCAGAAGTCACTACTAAGGACTGCGGTAACAAACTCCGTCTGAACAAGGATTTGGAGTTGTCGATCGGATGCCAACCTGTACACAGTTCCAGGCCGCCCTGACTAATTTGGTGCGTAGTCAGGGAGACGCGGAGGTATAGAACGGTTGGCCTGGACGCGCTTCCGGGACCTGGGGAAGGGGCGGGCTCCTAAGCTCCGCCCCATGGGTGGAGCCACGTCCAGGACGAGCTGGGACTGCGGCAG
Seq A exon
GGCACCATGAAGCAGCTGCCCATCTTGGAGCCCGGAGACAAGCCCAGAAAAGCTGCATGGTCTGTAAGGAAGGATGTAGACACGTCTAAGAACTGGGGTTTTGGTTTCATGTATAGCTAGTCCACTGACCCATCTGATCGCCACTGCAAAGGGGTAGTAATGAAACTGTG
Seq C2 exon
GAACACACCGGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTATGAGCATGCCAGCTTCCTTCCATCCTGCTCTCCTCACAGTATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTACAAGTCATGAATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591_MULTIEX1-2/6=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.361 C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTCGATCGGATGCCAAC
R:
GAAGGAAGCTGGCATGCTCAT
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]