RnoEX0073385 @ rn6
Exon Skipping
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13852181-13859903:-
Coord C1 exon
chr3:13859746-13859903
Coord A exon
chr3:13855895-13856047
Coord C2 exon
chr3:13852181-13852342
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCGAGTAAATGTTTTCTAGGAA
3' ss Score
5.02
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTACACTCTGACTTGCCCTGGAGACAAGCCCTGCCCTCGAGTTGGCCACAGCTGCTCGTATTTTCCCCCAGTTGGCGAGGCCGAGAAAGGGAAGGTCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGCTTCTCAGATGTACACACCATGGATTTGG
Seq A exon
GAACACACCGGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTATGAGCATGCCAGCTTCCTTCCATCCTGCTCTCCTCACAGTATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTACAAGTCATGAATCCCG
Seq C2 exon
AAGCCAGGACATGGAGCACACCAGAAGTGACTGGCTGCCCACCATCCCCAAGAACATTCCACACATCATCAGCAGCTATTGGAAACCACCTCTACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGAAGTTGCATGTATTTGACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591_MULTIEX1-4/6=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.269 C2=0.382
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(77.4=75.9)
A:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
C2:
PF134151=Kelch_3=PD(51.0=45.5),PF134151=Kelch_3=PU(50.9=49.1)
Main Skipping Isoform:
ENSRNOT00000025194fB12021
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTTGCCCTGGAGACAA
R:
CCCCAAAGACGTAGAGGTGGT
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]