DreEX0060380 @ danRer10
Exon Skipping
Gene
ENSDARG00000103899 | rabepk
Description
Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
Coordinates
chr5:2461551-2465995:-
Coord C1 exon
chr5:2465823-2465995
Coord A exon
chr5:2462607-2462762
Coord C2 exon
chr5:2461551-2461724
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGTGTTTTTGGCAGATA
3' ss Score
10.26
5' ss Seq
CAGGTTATT
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTATGTTCTGGAGCCCACAGGTGCAGCTCCTGGAGTCTCCGTAGGCCACACCTGCTCATTCCTGCCCGCTGCCCATCACCATGATGAAGATGGAGGAGGAAAGGGGAAGATTGTGATTGTCGGAGGAGCAAATCCCAGTGGAAGCTTCGCTGACTCCTACATCATCAATCTAG
Seq A exon
ATACTCATCAATGGGATCTTCCAGATTGGGAGGGTCTGCAGGCACGTTATGAACACTGCAGTTTCACTCCTGAAAGCGAGCCGCAAAGCCTCTGGGTGTTTGGAGGAGCAGAGAAGAGCACAAACCGCAACTGTGTTCAAGCGCTGCGCTTCTCAG
Seq C2 exon
ATGGTGGTGAAGGCCGCAGGTTTTGGCAGTCGGTGCAGGTGACTGGAGTGCCTCCTTCTGGCCGCACGTATCACACAAACTCAGCTTGTGTTGGAAACCGGCTGTTTGTGTTTTCTGGAGGAGAAGCAGGATCTTCAGCAGTCACTGATGCGCAGCTCCACGTGTTTGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103899_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.113 C2=0.136
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(85.2=78.0)
A:
PF0764610=Kelch_2=PD(13.0=13.2)
C2:
PF134181=Kelch_4=PU(70.4=64.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCTGGAGTCTCCGTAG
R:
CAAACAGCCGGTTTCCAACAC
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]