MmuEX6100733 @ mm9
Exon Skipping
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34641087-34650849:-
Coord C1 exon
chr2:34650692-34650849
Coord A exon
chr2:34646023-34646175
Coord C2 exon
chr2:34641087-34641248
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCGCATAAATGTTTTCTAGGAA
3' ss Score
6.76
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTGG
Seq A exon
GAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTG
Seq C2 exon
AAGACAGGACGTGGAGCACACCAGAAGTGACTGGCTCCCCTCCATCCCCAAGAACATTCCACACATCGTCCGCAGCTATCGGAAACCAACTATACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGCCTGTGGAGGACGTGAAGTTGCATGTATTTGACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-'6-7,'6-5,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.340 C2=0.436
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(85.1=88.9)
A:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
C2:
PF0764610=Kelch_2=PD(20.8=20.0),PF134181=Kelch_4=PU(70.4=69.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTTGACTTGCCCTGGAG
R:
AGTTGGTTTCCGATAGCTGCG
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: