BtaEX0029436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96094957-96108089:+
Coord C1 exon
chr11:96094957-96095114
Coord A exon
chr11:96103971-96104123
Coord C2 exon
chr11:96107928-96108089
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGGGTGAAATGTTTTCTAGGAA
3' ss Score
7
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTACACCCTGACCCTGGTTGGAGACAGCCCCTGTGCACGGGTTGGTCACAGCTGCTCATATTTACCCCCTGTTGGTGATGCCGAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAGATCCAAACAGAAGCTTCTCAGATGTGCACACCATAGATCTGG
Seq A exon
GAACACACCAGTGGGATTTAGCCACCTCAGAGGGCCTCCTGCCCCGGTACGAGCACACCAGCTTCATTCCCTCCTGCACACCTCACAGCATCTGGGTGTTTGGAGGGGCCGACCAGTCAGGAAATCGAAACTGCCTGCAAGTTCTGAATCCTG
Seq C2 exon
ATACCAGGACTTGGACTACCCCAGAGGTGACCGGCCCACCGCCATCCCCAAGAACTTTCCACACGTCATCGGCAGCCATTGGAGACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGCAGCTTCATGTGTTTGATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.173 C2=0.473
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(77.4=75.9)
A:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
C2:
PF134151=Kelch_3=PD(51.0=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGGTGATGCCGAGAGAG
R:
ACACATGAAGCTGCACATCCT
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development