RnoEX0073379 @ rn6
Exon Skipping
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13855895-13859903:-
Coord C1 exon
chr3:13859746-13859903
Coord A exon
chr3:13858962-13859204
Coord C2 exon
chr3:13855895-13856047
Length
243 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCGTCCCCACCACAGTTC
3' ss Score
8.46
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTACACTCTGACTTGCCCTGGAGACAAGCCCTGCCCTCGAGTTGGCCACAGCTGCTCGTATTTTCCCCCAGTTGGCGAGGCCGAGAAAGGGAAGGTCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGCTTCTCAGATGTACACACCATGGATTTGG
Seq A exon
TTCCCACCACTGCGGTCTCTCCACTAGCCCTGGAACCATTCTCACTCTGGTCTCCGTCCTTCCATGTCGGCTCACTACACAGTGCATGTCCCGTACCCGTGCAGAAAGTGTTGCTCTTTGGTTTGGACAGGGCTGGTTTTTTTTGTTTTGAAGCAGTCTCATGTGGTTCAGGCTGGACTTGAACTCACTGTGAGGCTGAGAGCATGACCTGGAACTTCTGGTTCTCTTGCCTTTACCTTCCAA
Seq C2 exon
GAACACACCGGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTATGAGCATGCCAGCTTCCTTCCATCCTGCTCTCCTCACAGTATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTACAAGTCATGAATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591-'13-10,'13-9,14-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.269
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(77.4=75.9)
A:
PF0764610=Kelch_2=PD(0.1=0.0)
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Inclusion Isoform:
ENSRNOT00000025194fB12021
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACTCTGACTTGCCCTGG
R:
ACAGTTTCGATTTCCTGACTGGT
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]