MmuEX6100732 @ mm10
Exon Skipping
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34795172-34799912:-
Coord C1 exon
chr2:34799751-34799912
Coord A exon
chr2:34797375-34797433
Coord C2 exon
chr2:34795172-34795329
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTCTTCTGCACAGGGC
3' ss Score
10.18
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
Exon sequences
Seq C1 exon
AGAGTTCCGGGAGGCCCTGACTAAGTTTGGCGCGTAGTCCCGGAGACCCGGAGGCGTAGAGCGGTTGGCCTGGACGCGCTTCCGGGACTGGGGAAGAGGACGGGCTCCTAAGCTCCGCCCCATGGGTGGAGCCACGTCCAGGACATGCGGGGGCTGCGGCAG
Seq A exon
GGCATCATGAAGCAGCTGCCCATCTTGGAGCCTGGAGACAAGCCCAGGAAAGCCACATG
Seq C2 exon
GTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-'0-3,'0-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.516 C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764610=Kelch_2=PU(85.1=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGGGAAGAGGACGGG
R:
ATATGAGCAGCTGTGGCCAAC
Band lengths:
138-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types