BtaEX0029434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96090626-96095114:+
Coord C1 exon
chr11:96090626-96091312
Coord A exon
chr11:96092488-96092666
Coord C2 exon
chr11:96094957-96095114
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTGTCTTATGCATAGGAC
3' ss Score
8.67
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
TGCTAATTGTGGAATGAGTCAGCTTTTTAAAGCGCCAAAGCTTGAATTGGCCTAAAGATCGCGCAGAGAAATTTACACCCGGGAAAGCACCCTCAACTCTCCCTTTCAGAAACCATTTCTAACAACCGCTGGAAATGAAAATATCCTAGCTCCTTTAAGATAGCCCATGGGGATTTGGGTCACCTAAACAGATGCCCAACCCGTGGCGTTTCGCTTGGAAATCGTTTCCAAGTAGCCCTGCCTTATTTACTCCGCCGGGGAGGTAGGGCCCGCAGGAAGACCTGGCCACTTCAGCTCTGGAGAAATACACAAACAGGTCTTCACCTGGCACACCAGGACCCCTTACGCTCCCTTCCAAGGGCGCGCCCCGAGGACCCAGTCCTCCAGGCTGGGAGCGGTTGGCCGCCGCGCTCTTCCGGGGTCTGGAGGAGGAGCGAAGGTCTAAGACCCGCCCCCACTGGGGCGGAGCCACGGCCCAGGACTGGCCTAAACCGTCGCAG
Seq A exon
GACATCATGAAGCAGCTGCCAGTCTTGGAGCCTGGAGACAAGCCCAGGAAAGAAACATGGTCTGTAAGGAAGGATTCAGACAGAGAAACACATGAGTTTTTGTTTCATTTATAAGTAGTTTACTAACATATTTGATCATCTATGAAAAACAGTAGAGATGAAACTGTCTGCAGTTTCTG
Seq C2 exon
GTACACCCTGACCCTGGTTGGAGACAGCCCCTGTGCACGGGTTGGTCACAGCTGCTCATATTTACCCCCTGTTGGTGATGCCGAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAGATCCAAACAGAAGCTTCTCAGATGTGCACACCATAGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0764610=Kelch_2=PU(77.4=75.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTACGCTCCCTTCCAAGG
R:
CTCTCTCGGCATCACCAACAG
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development