DreEX0060378 @ danRer10
Exon Skipping
Gene
ENSDARG00000103899 | rabepk
Description
Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
Coordinates
chr5:2465823-2468785:-
Coord C1 exon
chr5:2468696-2468785
Coord A exon
chr5:2468416-2468483
Coord C2 exon
chr5:2465823-2465995
Length
68 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTTATAGAGTAT
3' ss Score
-8.13
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TTTTGATATAATTTCCGGCAAGGTTTTCTCTTCCTTCTTCTGTCAGTCAGTCGTTTCCATCATCGATCATATTAACATTTGTCGATAAAG
Seq A exon
TATAAACTGGTGTACATGGAGCTGATTCCTGTTCTGGAGCCCGAGCAGAAGCCGCAGAACAGACACTG
Seq C2 exon
GTATGTTCTGGAGCCCACAGGTGCAGCTCCTGGAGTCTCCGTAGGCCACACCTGCTCATTCCTGCCCGCTGCCCATCACCATGATGAAGATGGAGGAGGAAAGGGGAAGATTGTGATTGTCGGAGGAGCAAATCCCAGTGGAAGCTTCGCTGACTCCTACATCATCAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103899_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.556 C2=0.305
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0764610=Kelch_2=PU(85.2=78.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCAAGGTTTTCTCTTCCT
R:
TCCCCTTTCCTCCTCCATCTT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]