DreALTA0022191-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103899 | rabepk
Description
Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
Coordinates
chr5:2468416-2468785:-
Coord C1 exon
chr5:2468696-2468785
Coord A exon
NA
Coord C2 exon
chr5:2468416-2468483
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTGTGTGTGTGTTTATAGAGTAT
3' ss Score
-8.13
Exon sequences
Seq C1 exon
TTTTGATATAATTTCCGGCAAGGTTTTCTCTTCCTTCTTCTGTCAGTCAGTCGTTTCCATCATCGATCATATTAACATTTGTCGATAAAG
Seq A exon
NA
Seq C2 exon
TATAAACTGGTGTACATGGAGCTGATTCCTGTTCTGGAGCCCGAGCAGAAGCCGCAGAACAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103899-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.556
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTTCTGTCAGTCAGTCGT
R:
GGCTCCAGAACAGGAATCAGC
Band lengths:
100-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]