RnoALTD0024825-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13861842-13864865:-
Coord C1 exon
chr3:13864674-13864865
Coord A exon
chr3:13864541-13864673
Coord C2 exon
chr3:13861842-13861900
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCTTCCTCTCTTCCGCATAGGGC
3' ss Score
9.94
Exon sequences
Seq C1 exon
GCAAAGCCTAGCACCACTCGGGAGGCTGGAGCAGAATTCAAGGTCAGCTTGGCTTACATGAGTTCCAGTCCATGCTTTCCATTCAGAAGTCACTACTAAGGACTGCGGTAACAAACTCCGTCTGAACAAGGATTTGGAGTTGTCGATCGGATGCCAACCTGTACACAGTTCCAGGCCGCCCTGACTAATTTG
Seq A exon
GTGCGTAGTCAGGGAGACGCGGAGGTATAGAACGGTTGGCCTGGACGCGCTTCCGGGACCTGGGGAAGGGGCGGGCTCCTAAGCTCCGCCCCATGGGTGGAGCCACGTCCAGGACGAGCTGGGACTGCGGCAG
Seq C2 exon
GGCACCATGAAGCAGCTGCCCATCTTGGAGCCCGGAGACAAGCCCAGAAAAGCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591-2-1,3-1,4-1,5-1-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.361
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCTAGCACCACTCGG
R:
ATGCAGCTTTTCTGGGCTTGT
Band lengths:
249-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]