HsaALTD1021768-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000136933 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]
Coordinates
chr9:125203008-125207721:+
Coord C1 exon
chr9:125203008-125203066
Coord A exon
chr9:125203067-125203070
Coord C2 exon
chr9:125207564-125207721
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
ATACATCCTTCCTTTGGCAGGTA
3' ss Score
8.86
Exon sequences
Seq C1 exon
GACACCATGAAGCAACTGCCAGTCTTGGAACCTGGAGACAAGCCCAGGAAAGCAACATG
Seq A exon
GTCT
Seq C2 exon
GTACACCTTGACTGTCCCTGGAGACAGCCCCTGTGCTCGAGTTGGCCACAGCTGTTCATATTTACCCCCAGTTGGTAATGCCAAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGAAGCTTCTCAGACGTGCACACCATGGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136933-5-8,6-8,7-8,8-8-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764610=Kelch_2=PU(78.8=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAACCTGGAGACAAGCC
R:
ATGAACAGCTGTGGCCAACTC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains