BtaALTD0017990-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63421482-63424540:-
Coord C1 exon
chr17:63424484-63424540
Coord A exon
chr17:63424361-63424483
Coord C2 exon
chr17:63421482-63421595
Length
123 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
CCCTGTGCCCCCTTTTGCAGGAC
3' ss Score
12.16
Exon sequences
Seq C1 exon
GTCGGGGAGCAGTGACCCCTACTGCATTGTGAAAGTGGATGACGAAGTTGTGGCCAG
Seq A exon
GTGAGGCGGGGAGAAGCCAGGCACGGGGCGAAGGAGACGGGGGAGTCCAGGTGTAAGGATCCACGTTGAAAAGAGAGCCTTGGGGGGCACGCTTACCCCACGGATGGACTCACTGGCCTGTTG
Seq C2 exon
GACAGCAACCATCTGGCGGAGCCTGAGCCCCTTCTGGGGGGAGGAGTACACCGTGCACTTGCCCCTGGATTTCCACCATCTGTCCTTCTACGTGCTGGACGAGGACACAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
NA
C2:
PF0016825=C2=FE(46.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGGAGCAGTGACCC
R:
CCCACTGTGTCCTCGTCCAG
Band lengths:
171-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development