BtaEX0029747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63415537-63429841:-
Coord C1 exon
chr17:63429474-63429841
Coord A exon
chr17:63424484-63424540
Coord C2 exon
chr17:63415537-63415666
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAAACCTTCTCCTTCTGCAGGTC
3' ss Score
10.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCACCAAGAGCGCCAGACTAGAAGGCAAGGGCTGGCGGTGTGTCCCCCGCGCGCTCTGCCAGCTCGGCGCCCGGCTCCTACCTGTAGAGTCCGGGGAGGGAGGCGCCCCCTCCCCGGTCACTATCCTCTCTCCTCCTTCGGAAACCTCCCGTCCAGCTACCCGCGCGTTTCGGGTAGGTGGCCCGGGGACTCCGAGAGAGGGTGCCAGGCTCTCTGCGGGTGACATGTAGATGCCCTCCCTGCCGCGGTCCAGCCTCGGAACCCGGGCGCCCTCCTGGTCGGAAAGTTTGGGGCAGGGCGCCATGGCCAAGAGCAGCTCCCTGAACGTCCGCGTCGTGGAGGGCCGGGCGCTGCCCGCCAAGGATGT
Seq A exon
GTCGGGGAGCAGTGACCCCTACTGCATTGTGAAAGTGGATGACGAAGTTGTGGCCAG
Seq C2 exon
GAATCGACAGCTGGATCAACCTGAGCCGCGTGGACCCGGACTCGGAGGTGCAGGGTGAGATCTGCCTGTCCGTGCAGACGCTGGAGGACGTGCGGGGCCGTTGTCTTCACTGTCACGTGCTCCAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
PF0016825=C2=FE(23.2=100)
C2:
PF0016825=C2=PU(9.8=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGCAGCTCCCTGAAC
R:
GGACAGGCAGATCTCACCCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development