MmuEX6020435 @ mm10
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120649316-120663843:+
Coord C1 exon
chr5:120649316-120649534
Coord A exon
chr5:120652814-120652870
Coord C2 exon
chr5:120663726-120663843
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAGCCTTCTTGATCCCACAGGTC
3' ss Score
9.74
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCCTGCATCCAGCCCACTCGCACCCCAGACCCGGACACGTGGGAACCGGCTGACAGCGTGCTTGGCCCGCAGCTGATGACATGTAGGGTCACCTCCTGGTCCAGCCTCAGAACCTCGGCAGACTCCTTGCCTGGAAAGTTTGGGACTGTGCGACATGGCCAAGAGCGGCTCGCTGAGTATCCGCGTGGTGGAGGGACGAGCACTGCCCGCCAAGGACGT
Seq A exon
GTCTGGAAGCAGTGACCCCTATTGTCTGGTGAAAGTGGATGACCAAGTGGTGGCCAG
Seq C2 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCGGTGCAAGGGCCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602_MULTIEX1-2/8=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
PF0016825=C2=FE(23.2=100)
C2:
NO
Main Skipping Isoform:
ENSMUST00000031606fB3361
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCGACATGGCCAAGAG
R:
TGGTAGTACTGGGAAGGCAGG
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types