GgaEX1048317 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11198173-11199604:-
Coord C1 exon
chr15:11199222-11199604
Coord A exon
chr15:11198364-11198420
Coord C2 exon
chr15:11198173-11198286
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTTCTCCCCCTAGCTC
3' ss Score
12.21
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGGGCACAGGGCTTAGGCATGGCTTTACCCACCCTGGCAGCAGTGAGCTCCCGGAGGCTGTGAGCCCCACGCCGTGGGGTTTTGACCACCGTGGGCACAGGGCCAGCCCACCCAGCTCGCCCGCTGCTGCGTGCCCGCGCACTCCAGCACAGAGAAAAACAAACCCAGAAGCAGCAAAGGAAGGAGTGGCAGAGGGACGCGGCAAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGCAGGGCCTCGCAGCCCCTCCGGAGGTGTGGGCTGCCCCATCAGCCCCCATCTCCCCACCCTCCCCCCCAGTTCGCTGCCATGGCCAAAAGCACCTCGCTGTACTGCCGGCTGGTGGAGGGGAAGGAGCTGCCCGCCAAGGACAT
Seq A exon
CTCTGGCTCCAGCGATCCCTACTGCGTGGTCAAGGTGGACAATGAGGTGGTGGCCAG
Seq C2 exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
PF0016825=C2=FE(23.2=100)
C2:
PF0016825=C2=FE(46.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGGGGAAGGAGCTG
R:
ATGGTGTCTTCATCCAGCACG
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]