BtaALTD0018079-2/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000025848 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:91769284-91769886:+
Coord C1 exon
chrX:91769284-91769390
Coord A exon
chrX:91769391-91769435
Coord C2 exon
chrX:91769781-91769886
Length
45 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TTGTGTCTCCCCACACCTAGTCT
3' ss Score
5.82
Exon sequences
Seq C1 exon
GGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCCGAGAAGCCACCTGTGGATGGTTGACCTGCTCTGGGCTTAG
Seq A exon
GTAGTAGAGTCTGCAGACCTGCGGGCCTGGCCCGGAGAGGACCTC
Seq C2 exon
TCTCTGGATGGTCGTCAGATCCGTGTAGACCACGCTGGCAAGTCAGCCCGGGGATCACGAGGGGGTGCCTTTGGGGGCTATGAACGTGGTCGTGGCTACCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025848-6-7,7-7,8-7,9-7-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(7.2=23.8)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=19.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGTTGACCTGCTCTG
R:
CTCTAGGGTAGCCACGACCAC
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development