MmuALTD0011653-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:7720974-7721464:-
Coord C1 exon
chrX:7721414-7721464
Coord A exon
NA
Coord C2 exon
chrX:7720974-7721073
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGTCTCCTTCCCATACCTAGTCC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTAGTAGAGTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTC
Seq A exon
NA
Seq C2 exon
TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGTGGTCGCAGTTACTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-4-4,5-4,6-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=20.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGTCTGCAGAGCTGTGGG
R:
TCTAGAGTAACTGCGACCACG
Band lengths:
146-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: